Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1713 ATGGCTAACCAGCAAATTGTCAACTCTGTTTCTTCTTCATCTTCTGTGGTGTCTCTGAAAAAATATGATGTTTTTCTTAGCTTTCGCGGTGAAGATACCCGCAACAACTTCACCAGCCATCTTCATGATGCTCTGACCCGAAAGAAAGTGGAGACCTACATAGATTACAGGCTTGAAAAAGGAGATGAGATCTCACAAGCACTCATCAAAGCCATACAAGACTCACTTGTATCTGTTGTCATTTTCTCTGAAAACTATGCTTCCTCTAAGTGGTGCTTGGATGAGATCACTAAGATTCTTGAATGCAAGAGGGATCATGGACAAATTGTTATACCTGTGTTCTACAAAGTAGATCCATCCCATGTGAGGAACCAGAGAGAGAGCTACAAGGAAGCTTTTGCAAAGCATGAACAAGATCTCAAGAACAGTGATGACAAGTTGCAGAAATGGAGATGTGCCCTCACTGAAGCAGCCAATTTGGCTGGTTGGGACTCTCGAGTTTATAGGAATGAAACTGAATTCATTAAGGACATTATTGAAGACGTTTTACAAAAACTGAATATCAGATACCCAATTGAATTGAAGGGAGTGATTGGAATAGAGAGAAATTACACAGGGGTTGAATCATTATTAGAAATTGGCTCAAGAGAAGTTAGAATAATTGGAATATGGGGCATGGGTGGCATAGGTAAGACCACCCTAGCACTTGCTTTACATGCCAAGTTGTATTCACAATTTGAAGGTCATTGCTTTCTTGCAAGTGTGAGGGAAAAATCAGAAAAGTTTGGTGTAGATGTTTTACGCAATAGACTTTTTTCTGAGTTGTTAGAAGAAGAAAATCTTCGTGTTGTGGCACCTAAAGTTGAATCTCATTTTGTGTCTAGAAGGCTTAGACGCAAAAAAGTTCTTATTGTTTTGGATGATGTGGCTACCTCAGAACAGTTGGAAGATCTCATAAGTGATTATGATTGTTTGGCACCGGGAAGTAGAGTGATTGTAACAACTAGAGACAAACACATATTTAGCCAGGTGAATGGAATATATGAGGTTAAGGAATTGAATAACCATGACTCTCTTCAACTTTTTTGCTTGAATGCCTTCAGAGAAAAGCAACCCGAAATTGGATATGAAGAGCTATCAGAAAGTGTGATTGCATATTGCAAAGGCAACCCTTTGGCTTTAAAAGTCTTAGGTGCGCGTCTTCGATCAAGAAGCAGAGAAGCATGGAAAAGTGAAGTTAGAAAGCTCCAAAAGATTCCAGATGTGAAAATTCATAATGTGTTGAAATTGAGTTTTGAAGACTTAGATCGTACTGAGAAAGACATATTTCTAGACATTGCATGTTTTTTCAAAGGAGAATATAGAGATCATGTAACAAGTTTACTAGATGCTTGTGATTTCTTTGCAGCCATTGGGATAGAGGTTCTTTTAGATAAGTCTCTTATAACCCTTTCAAATAAGGACACAATAGAAATGCATGACTTGTTACAAGAAATGGGATGGGAAATTGTTCATCAAGAATCTATCAAGGATCCTGGAAGACGAAGTCGATTATGGGATCCAGAGGAAGTGTATGATGTGCTGAAATATGGAAGGGGAACTGAAGCTGTTGAAGGCATAATTTTAGATGTGTCTAAAATTAAGGATCTACAATTGAGCTATGATTCCTTTACAAAAATGACTAACATAAGATTTATTAAATTTCATTATGGGCAGTGGAATGGCAGATGTAAGCTATACATTCCTGATGGTCTTAAATCATTGTCTAACAAATTGAGGTACCTTGAGTGGCATGGATACTCTTTGGAGTCTTTGCCATCAACATTCTGTGCTAAATTGCTTGTTGAGCTTTCCATGCCTTACAGTAACCTTGAAAAGCTCTGGGACGGAGTTCAGAATCTAGTGAATTTAAAGGAAATCGACCTTAGATTCTGCAAAGACCTGGTTGAGGTGCCAGACTTATCTATGGCGACAAATCTTGAAGAACTATCTCTTGCTCAGTGTAAAAGCCTGCGTCGAATTCATCCATCCATTTTATCTCTCCACAAGCTTCAGGATCTGGATTTAGAAGGCTGCACAGAGATTGAAGGCCTTCAAACTGATGTCCATTTAAAATCTCTCCGCAACATTCGTCTCAGCAACTGCTCATCCCTGAAGGAATTTTCAGTCTTCTCAGAGCCACTAGAGAGACTCTGGTTAGATGGTACAGGCATTCAAGAATTTCCCTCATCACTTTGGCATTGTGAGAAACTTAGTTTCATCACTCTACAAGGTTGTGACAGTCTTGATAATTTTGGGAACAAGTTATCCTATGAGGCTGGAATGAAATCTATTAACTATCTAGAACTTTCTGGATGCAAACAACTCAATGCATCAAATCTATGTTTTATCCTTAATGGTCTACATTCTTTAAAGGATTTGTCTTTGGAAGATTGTTGCAACTTGAAAGCACTCCCTGACAACATTGGCTTGTTATCATCACTACATAAGTTACACCTAAGCAGAAGCAATGTTGAGAGCTTGTCTACAAATATCAAGAACCTTTTGATGTTGAAAGAGCTGAAGTTAGACAACTGCAAAAAACTTGTGCATCTCCCAGAGCTTCCACCTTCCCTGCAAGTATTAAGTGCTGTTAACTGCACATCTCTGGTTGTCAACTTCACTCAATTGCTTAGATCCTTTTCACTCAAACATGGACCTGAAGAGCATCGTAAACATGTTTTTCTCCCGGGAAACCGAGTCCCTGAGTGGTTTAGCTTTCATGCCGAGGGGGCTTCAGTAACCATTCCTTATCTTCCACTTTCTGGCTTGTGTGGCTTTATTTGGTGCTTCATTCTTTCTCAGTCTCCGACAGATGGAAAATACGGATATGTTGAATGTTACATCTACAAGAATTCCAAGAGAGTTGATGGCAAAGGTACCTTTCTAGGTGATCAGAATTTGATTACGGATCATGTGTTTCTTTGGTATACTGACATCATAAAAGGTGGAGTCAAGCATTCCATGCAGAAGGTATTGGAAGAAAGTATAGCTTGTGATCCTTATGACATATCATTTAAATTCTCTCATGAAGATGAGGAAGGAGAATGGTCAATGAAGGGGATAAAGGGATGTGGAGTTTGCCCAATATATGCTTCTGGAAATAGCTATTCCTTTCAACAAGAGGGATTGGAGTTTGAGTTTGGGAATAGTTCTGTAGATACTGTTGAGTTAGAACCCAACAGTTCAAATTATATTGATGAGTTACAACATAGAGCAACTGGATTTGAAGTCAAAGGGGCTAATCATAACAATGAAAAAGACCTGACTAAGAAATTGCAGGATGTTATGCACCAAACAATTATAACAGAAGAAGACAGAGAATATCATGAAGAGGGAAAAGGAACCAAGGGAAAACAAAAACTACTAGTAGAGGAAACAAATGTAGTTTATCTGACCAAGAGTTCCATAGAAAAAACAGAAGTTCATCAGAGACATGCTAGTAGTAGTAGTACTCTCTCCATAGATGCAGGCTTTAACCCCAGCAACAACAACAACACAACAGAGACAATTTTGGAAGTTTCAGTCTCTAGTGTTCATGTTCCACCAACTAATGCTGATCCACTGGAGATTACTCCAACAGAAGAATGTGCCACTTTTAGGGACATTGGAGCAATCAAGAAAAGGCACATCCCTCTTTTAGAGGAAGCAATAGCAAATTACCCGTCTCTTTGGTCATGGCGTGTGAAATTCACTCGTTCAAAAATGAGAGAATTTGGATACACCATCTTGGGTGATATGTTGGAGTTCCTCTCAGTGACACGGTGGGGAGACCTCACTGAAACAAAAAAAGCTGAATTTGAGTCTTTAGTGTGTGAGTTGGAGACCTTTGGGTTTGATATTCAATGGTTGAAGAACACAGAGACACTGATTAAACAAAGCAAGATAGATAAGGTAGCCATTGATCACATGAAGAGACTTGAAGTGCAAGTAAAGGAACAACAAACTGTTGTGGAGGAATTAGAGGATCATCTTCAGGTGGCCAAAGTGGAGCTAACAAATTTGAAATCAGAACTGGGCAATTTAAGGTGTGAGCTTGGAAACTTGGATGACTTCATTGGATTCTGA 4107 0.3901 MANQQIVNSVSSSSSVVSLKKYDVFLSFRGEDTRNNFTSHLHDALTRKKVETYIDYRLEKGDEISQALIKAIQDSLVSVVIFSENYASSKWCLDEITKILECKRDHGQIVIPVFYKVDPSHVRNQRESYKEAFAKHEQDLKNSDDKLQKWRCALTEAANLAGWDSRVYRNETEFIKDIIEDVLQKLNIRYPIELKGVIGIERNYTGVESLLEIGSREVRIIGIWGMGGIGKTTLALALHAKLYSQFEGHCFLASVREKSEKFGVDVLRNRLFSELLEEENLRVVAPKVESHFVSRRLRRKKVLIVLDDVATSEQLEDLISDYDCLAPGSRVIVTTRDKHIFSQVNGIYEVKELNNHDSLQLFCLNAFREKQPEIGYEELSESVIAYCKGNPLALKVLGARLRSRSREAWKSEVRKLQKIPDVKIHNVLKLSFEDLDRTEKDIFLDIACFFKGEYRDHVTSLLDACDFFAAIGIEVLLDKSLITLSNKDTIEMHDLLQEMGWEIVHQESIKDPGRRSRLWDPEEVYDVLKYGRGTEAVEGIILDVSKIKDLQLSYDSFTKMTNIRFIKFHYGQWNGRCKLYIPDGLKSLSNKLRYLEWHGYSLESLPSTFCAKLLVELSMPYSNLEKLWDGVQNLVNLKEIDLRFCKDLVEVPDLSMATNLEELSLAQCKSLRRIHPSILSLHKLQDLDLEGCTEIEGLQTDVHLKSLRNIRLSNCSSLKEFSVFSEPLERLWLDGTGIQEFPSSLWHCEKLSFITLQGCDSLDNFGNKLSYEAGMKSINYLELSGCKQLNASNLCFILNGLHSLKDLSLEDCCNLKALPDNIGLLSSLHKLHLSRSNVESLSTNIKNLLMLKELKLDNCKKLVHLPELPPSLQVLSAVNCTSLVVNFTQLLRSFSLKHGPEEHRKHVFLPGNRVPEWFSFHAEGASVTIPYLPLSGLCGFIWCFILSQSPTDGKYGYVECYIYKNSKRVDGKGTFLGDQNLITDHVFLWYTDIIKGGVKHSMQKVLEESIACDPYDISFKFSHEDEEGEWSMKGIKGCGVCPIYASGNSYSFQQEGLEFEFGNSSVDTVELEPNSSNYIDELQHRATGFEVKGANHNNEKDLTKKLQDVMHQTIITEEDREYHEEGKGTKGKQKLLVEETNVVYLTKSSIEKTEVHQRHASSSSTLSIDAGFNPSNNNNTTETILEVSVSSVHVPPTNADPLEITPTEECATFRDIGAIKKRHIPLLEEAIANYPSLWSWRVKFTRSKMREFGYTILGDMLEFLSVTRWGDLTETKKAEFESLVCELETFGFDIQWLKNTETLIKQSKIDKVAIDHMKRLEVQVKEQQTVVEELEDHLQVAKVELTNLKSELGNLRCELGNLDDFIGF* 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1713 1368 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 837 - -
Lja6g1713 1368 SUPERFAMILY L domain-like 492 884 - -
Lja6g1713 1368 SMART till_3 21 160 IPR000157 GO:0007165
Lja6g1713 1368 Pfam TIR domain 21 189 IPR000157 GO:0007165
Lja6g1713 1368 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 837 IPR044974 GO:0006952
Lja6g1713 1368 MobiDBLite consensus disorder prediction 1155 1174 - -
Lja6g1713 1368 Gene3D - 187 350 IPR027417 -
Lja6g1713 1368 Coils Coil 126 146 - -
Lja6g1713 1368 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 842 1087 - -
Lja6g1713 1368 Pfam C-JID domain 909 1046 IPR045344 -
Lja6g1713 1368 MobiDBLite consensus disorder prediction 1159 1174 - -
Lja6g1713 1368 Gene3D - 352 436 IPR042197 -
Lja6g1713 1368 PRINTS Disease resistance protein signature 296 310 - -
Lja6g1713 1368 PRINTS Disease resistance protein signature 220 235 - -
Lja6g1713 1368 PRINTS Disease resistance protein signature 387 401 - -
Lja6g1713 1368 PRINTS Disease resistance protein signature 702 718 - -
Lja6g1713 1368 Gene3D Ribonuclease Inhibitor 725 899 IPR032675 -
Lja6g1713 1368 Gene3D Ribonuclease Inhibitor 535 724 IPR032675 -
Lja6g1713 1368 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 842 1087 IPR044974 GO:0006952
Lja6g1713 1368 Pfam NB-ARC domain 208 419 IPR002182 GO:0043531
Lja6g1713 1368 Pfam Leucine Rich Repeat 614 632 IPR011713 -
Lja6g1713 1368 Gene3D - 18 186 IPR035897 -
Lja6g1713 1368 Coils Coil 1317 1358 - -
Lja6g1713 1368 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Lja6g1713 1368 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Lja6g1713 1368 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 446 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1713 Lja-Chr6 44219946 44226772 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1713 18 854 WRKY Transcription Factor Family AT4G12020 32.509 1.74e-112 389