Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1708 ATGGGTAACAAGCTTTGTATGTGTTATCATTTCAGTGTAAAAGATAAAAGAAAGGTTCGAAAGCCTCCAGCGAAATCTACTTTGTCTCCCTTCAGTGACTTGAGCCTAGGACTAGAAGACTTTTTGGAGGGCAATGATATTGTCACTCCCATAAACCATGGTACCCCACTTTTTCTCTGCCAAATTTGTTGCCAATCAAAGCCTCTGAAGAATTCCTTCAATGTGGAGGGTTGTGCACATTTTTACTGCACAAAATGCACCCTCAAATACATAGTGTCCAAGCTACAATGCAACATGCTATACATCATGTGCCCTGAGCCAGAGTGCTCTGGGGCATTGAATCCTCAACACTGCAAGCCAATTGTACCCAACAATGTGTTAGTCTGGTGGGAGAACGCGCTGTGCGAAGCAGCGATTTCCGAGAAGGATAAGTTCTATTGTCCTTTCAATGATTGTTCGGCTCTGATGATGCTCGTTGCGGCTCGCGAGGGAGAGAAGGTCGTGTGTACAGATGCAAAATGTCATCACTGCAAGAGAAGCATTTGCATTCAGTGTAAAGCTCCTTGGCATCCAGATATGAGTTGTGAAAATTTTCAGAAAATGAAGGGCAACAATGATGGTATGATGTTGTACCTAGCCAAGAAAAGGAAATGGAGAAGGTGTCCAAACTGCAAGTATTATGTTGAAAAGGAAAAAGGATGCAATGTTATGGACTGCAGATCTAAAACAAATCTATTAAACCAGTAA 747 0.423 MGNKLCMCYHFSVKDKRKVRKPPAKSTLSPFSDLSLGLEDFLEGNDIVTPINHGTPLFLCQICCQSKPLKNSFNVEGCAHFYCTKCTLKYIVSKLQCNMLYIMCPEPECSGALNPQHCKPIVPNNVLVWWENALCEAAISEKDKFYCPFNDCSALMMLVAAREGEKVVCTDAKCHHCKRSICIQCKAPWHPDMSCENFQKMKGNNDGMMLYLAKKRKWRRCPNCKYYVEKEKGCNVMDCRSKTNLLNQ* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1708 248 SMART ibrneu5 128 195 IPR002867 -
Lja6g1708 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 143 IPR013083 -
Lja6g1708 248 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 52 243 - -
Lja6g1708 248 Pfam IBR domain, a half RING-finger domain 134 195 IPR002867 -
Lja6g1708 248 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 52 243 IPR031127 GO:0004842|GO:0016567
Lja6g1708 248 ProSiteProfiles TRIAD supradomain profile. 56 248 IPR044066 -
Lja6g1708 248 SUPERFAMILY RING/U-box 56 139 - -
Lja6g1708 248 SUPERFAMILY RING/U-box 205 239 - -
Lja6g1708 248 Gene3D - 193 244 - -
Lja6g1708 248 SUPERFAMILY RING/U-box 134 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1708 Lja-Chr6 44182864 44185317 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1708 60 240 C3H Transcription Factor Family AT2G19610 27.660 6.72e-20 86.3