Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1703 ATGAAGAAGCTTTCTCTTTATGCTTGCTTACTCAACTTGAGTCTTTTGGTTATTTTTCCCCAGGGAAAAGCAAATCATCAGGCTGATAAACTTGATGACCTTATTCTTTCCAAGAGCTCACAAAATCGTCCTATGACATTTTCTTGGGAAGAGGAAGATGCATTGAAAACATATTCTAATGCAGCTTATGTTGCACCCCAAGAGGGGCTAATGCAGGGTGATAAGATTGTGGCATTGCCTGGCCAGCCCTATGGGGTGAATTTTGACCAATATGCAGGCTATGTCACTGTTGATGCAGAAGCTGGAAGAGAGCTTTTCTATTATTTTGTGGAGTCTCCATATTCCCCTAAAACTAAACCTTTGGTCTTGTGGCTTAATGGAGGACCTGGTTGTTCCTCACTGGGGTATGGGGCCTTTCAAGAGCTAGGACCCTTCAGAATCAACCCTGATGGCAAAACTCTGTATCGTAACCAATATGCCTGGAATGAAGTGGCAAATGTGCTTTTCCTGGAATCTCCTGCGGTAGTAGGCTTTTCCTACTCAAACACTACTTCAGACTATGACAAAGCAGGAGATAAAGCTACTTCCATTGATGCCTATGCATTCCTCATCAACTGGCTAGAGAGGTTTCCACAGTACAAAACCAGGGATTTTTACATAACCGGAGAGAGCTATGCTGGTCACTATGTGCCTCAGCTTGCATACACTATTATAGTCAACAATAAATTACATCAACAAACCATTATTAACCTCAAAGGCATTGCTATAGGGAATGCTTGGATTGATGATGCTACCGGTTCAAAGGGATTGTATGATTACTTTTGGACTCATGCTTTGAACTCAGATCAAACCCATGAGTTGATTGAGAAGTACTGCGACTTTGCTTCTGAAAATCCTTCATCATCAATATGCATCAATGCGCGGCGAAGAGCCTTAATTGAGAAAGGAAACATAGACTTCTATAACATCTATGCACCACTGTGTCATGACCCTTCTCTGAAAAATGGAACAACTGGTTCTGTGTACGATTTTGACCCATGTTCTGATTACTATGGTATTGCCTATCTAAATAGGCCAGAGGTTCAATTGGCTCTTCATGCAAAACCAACAAATTGGACCCATTGCGGTGGTTCTGTTTGGAATGATAGCCCCATTACCATCCTCCCCATCATCGAGTATCTCATAGCCAGTGACATTAACTTGTGGATATACAGTGGTGATACAGATGCAAGGGTGCCTGTAACATCCTCCAGATATGCAATCAACATCCTGAAGCTCTCTATCCAGGAACCTTGGCGTCCATGGTATTCTGGAAGTGAGATTGGAGGATATGTGGTGGGATACAAAGGGCTGAAATTTGTGACAGTGAGAGGTGCAGGACATCTGGTTCCAAGTTGGCAACCAGCACGGGCTCTCACTATGATAGTCTCATTCCTCACTGAAAGCATTGCTCCTCCTCCATCTTAA 1467 0.4301 MKKLSLYACLLNLSLLVIFPQGKANHQADKLDDLILSKSSQNRPMTFSWEEEDALKTYSNAAYVAPQEGLMQGDKIVALPGQPYGVNFDQYAGYVTVDAEAGRELFYYFVESPYSPKTKPLVLWLNGGPGCSSLGYGAFQELGPFRINPDGKTLYRNQYAWNEVANVLFLESPAVVGFSYSNTTSDYDKAGDKATSIDAYAFLINWLERFPQYKTRDFYITGESYAGHYVPQLAYTIIVNNKLHQQTIINLKGIAIGNAWIDDATGSKGLYDYFWTHALNSDQTHELIEKYCDFASENPSSSICINARRRALIEKGNIDFYNIYAPLCHDPSLKNGTTGSVYDFDPCSDYYGIAYLNRPEVQLALHAKPTNWTHCGGSVWNDSPITILPIIEYLIASDINLWIYSGDTDARVPVTSSRYAINILKLSIQEPWRPWYSGSEIGGYVVGYKGLKFVTVRGAGHLVPSWQPARALTMIVSFLTESIAPPPS* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1703 488 ProSitePatterns Serine carboxypeptidases, histidine active site. 451 468 IPR033124 GO:0004185
Lja6g1703 488 Pfam Serine carboxypeptidase 80 480 IPR001563 GO:0004185|GO:0006508
Lja6g1703 488 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 19 483 IPR001563 GO:0004185|GO:0006508
Lja6g1703 488 ProSitePatterns Serine carboxypeptidases, serine active site. 220 227 IPR018202 GO:0004185
Lja6g1703 488 PANTHER CARBOXYPEPTIDASE 19 483 - -
Lja6g1703 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 169 IPR001563 GO:0004185|GO:0006508
Lja6g1703 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 180 IPR001563 GO:0004185|GO:0006508
Lja6g1703 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 451 464 IPR001563 GO:0004185|GO:0006508
Lja6g1703 488 PRINTS Carboxypeptidase C serine protease (S10) family signature 206 231 IPR001563 GO:0004185|GO:0006508
Lja6g1703 488 Gene3D - 347 379 - -
Lja6g1703 488 Gene3D - 387 480 - -
Lja6g1703 488 SUPERFAMILY alpha/beta-Hydrolases 77 480 IPR029058 -
Lja6g1703 488 Gene3D alpha/beta hydrolase 71 330 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1703 Lja-Chr6 44124594 44128542 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1703 344 480 Calmodulin-binding Proteins AT2G22960 29.452 5.16e-11 60.1