Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1698 ATGTCAGCTCGAGGTGGAAGGGGCCGGGTTCGGAGGGATTACCCTTCTAGATATGAAGATAGTAAAGGGAATAATGGGGTTACTGGGCGAGGCGGCGGCGGTAGCAATAGCAATAGCAATAGCAGCATTAACCACCCTCCTTCCAGGCACCTTTGGGTTGGGAATCTGTCTCATGATATTGTGGAGGATGAATTGGCTATCCCTTTCTTACGGTTTGGGCCGCTGGATAGTGTCGCCTTCCAGCCTGGTCGAAGCTTTGCGTTTATCAACTTCAAGAGGGATGAAGATGCTATTGATGCCATGAGATCACTGCAAGGTTTTCCTCTTGCTGGCAACTCGCTAAGAATCGAGTATGCTAAGGCGGATAAGCCACCGATAACATCACGTGATGAAGATTACTCACGGGATGAGCGGAGATCAGCATTAAGGGGATCATCTCCTGTCTCCAATAGAGAGCATAGAGGACGCCATGATAGCCCTGAACCACATTATTCTGACAAATCCAAGCTTAGTGATAAAAGTTCAGAGCCCAGTGAGGTTTTATGGGTTGGGTTCCCAGCTCAGTTAAAGGTGGAAGAATCCATTCTGAGAAGGGCTTTTTCTCCATTTGGTGAGATTGAGAAGATTACTACATTTTCAGGTCGTAGCTATGCCTTTGTTCGGTTCAGAAGTCTGACTTCAGCATGCAGAGCAAGAGACAACCTGAGGGGAAAGCTATTTGGGAACCCCCGTGTGCATATTTGTTTTGCCAAGAGTGATGCAGGTTCATCAAGCAGTGGGAGGAGCTCATTGAATGCTCCTCTTTCCCCACTTTACAAGCCACGTGATCGTGATGGATCTTCTGAGAATCTCATTCTGGATAGGAGCTTCGGTGGAGATCGGAATATTAGTTCTCCAAACCTTTACCGGAATCGGGATTCTGGAGATTCTGGTTCTTATGATTTTAACCTTAGGGGGGGTTCTTCATGGACTGGGGGAAATAACACAAATGAGCAAAGGAACATTGGACAGAAGGGAACTTCGCTAGGAGCACCACATGAATTCTATGGACATATAAATAGTCCACCAAGAGAAAGAAATGTTCATCTGGGTGATTTCCCACAGAAATTTCCTCAAAGGGGTGCATTCTTTGAAGATCAGCAGGCCATGCCAGAAGATATCCCCTATCTACATGAGGCTAAAAGGCTAAGGACTGGTCCTTCTTCTCCTGAGGGAGAGCTTCCAGAGTATCCTTTCTCTGAGTTCGAAAGGCAGAAACATGTTTTTCCAAGACTGTTACCTGATTTTCCCCAACGTGAGCATTTTGATCAAAGCTTTGATTCTGGAAATTTTGCTTATCGCCAAACACTTGATCACCGGCCAAATTCACCTCTGGCTCCTTTAGATAATAGGCATGAAGGATGGAAACCTTATGATAGCTTCCCAATGGGTCCTGGTACACTGAATTCCCAATCAAAATTTGTTGAGAAGAAAATATTCACACCTGAACCTGATAATTCATCTGTAAGTGAGTGGAAATGGGAAGGAACGATTGCTAAAGGTGGAACCCCGGTTTGTCGTGCACGCTGCTTCCCTGTGGGGAAGGTCCTGGATATCTTGCTACCTGACTTCTTGGATTGCACTGCAAGAACTAGTTTGGACATGCTTGCAAAGCATTACTACCAAGCAGTTGGTGTTTGGGTTGTTTTCTTTGTGCCTGGAAGTGATGCAGACATCGAATTCTACAATGAATTCATGCATTATTTGGAGGAAAAGCAGCGGGCTGCGGTTGCCAAGTTGGACGACAAGACGACAGTGTTTCTTGTACCTCCATCAGAATTTTCAGAGAAGGTGTTGAAGGTACCTGGTAAATTGAGCATATCTGGCGTCATTCTCAGGTTGGAGTATCCTACTTTAAATCATGGTCCCATGCCCATTGAAGGAGTCATGAAAAATGAAAATCTGTTGTCCTATAATGAGAATGCATTCAATCCAAATTCATCATTTCCATCAGTACGTATTCCTCCTCCATCTATTTCAGAATATGGCAATTCTGGAATAAGCAATCATTCATTTCTGGGAAATAAATTTCCAGCAGCTCCATCAGTTTCGGACTCAGCTCGTGCTCTGGTTAGCATGCCTGAATCTCATGATGACCGAAGTCGTTCTTATCCTCCACTCCCGCCGCAGACATCTGGACCAAACTGGTCTTCTCACAATCTGCAGAACTTTAGATCTTTACCGATGCAATTATCAAGTGCTGCTTCTGAGCCTATTGCCGAGGAGCGGCAGCCCATCATTCCAAGACCAGACATAAACTCAGCTCATCATTCCAATGCAATTTCTGGTATTCCTTTATCAATGCCTGTGGGAGCTCTGGAACCAGAACAACTTGTTCGACTAGCTGAAACTCTTCTGGAGCAAAGGAGGCAATCTGGAAGCTCGTTGAGCTCGTCCGCTTTCAGTGATCCTCGGCAGAACAGATTTGATGGATCTGACACCTCCCAGAGGTATGCAGCAGAGAACAACCTGGTGAATTCTGAATTTTCAGCGCCTCAGCTTAGTCAACTTCTACAGTCACAGATGTCAAACGTGGCTCTACCGCCACAAACAGTTCAAAGGGAACCACAAAGTGAGGTTAATGGAAATCAGCAGTTCAGAGATAGTGGTAGCTTGCAAGCAACATTACAGCTGGCTTCTGCTCTTCTTCATCAACTCCAGCAGGGAAAACCAAGTTGA 2718 0.4547 MSARGGRGRVRRDYPSRYEDSKGNNGVTGRGGGGSNSNSNSSINHPPSRHLWVGNLSHDIVEDELAIPFLRFGPLDSVAFQPGRSFAFINFKRDEDAIDAMRSLQGFPLAGNSLRIEYAKADKPPITSRDEDYSRDERRSALRGSSPVSNREHRGRHDSPEPHYSDKSKLSDKSSEPSEVLWVGFPAQLKVEESILRRAFSPFGEIEKITTFSGRSYAFVRFRSLTSACRARDNLRGKLFGNPRVHICFAKSDAGSSSSGRSSLNAPLSPLYKPRDRDGSSENLILDRSFGGDRNISSPNLYRNRDSGDSGSYDFNLRGGSSWTGGNNTNEQRNIGQKGTSLGAPHEFYGHINSPPRERNVHLGDFPQKFPQRGAFFEDQQAMPEDIPYLHEAKRLRTGPSSPEGELPEYPFSEFERQKHVFPRLLPDFPQREHFDQSFDSGNFAYRQTLDHRPNSPLAPLDNRHEGWKPYDSFPMGPGTLNSQSKFVEKKIFTPEPDNSSVSEWKWEGTIAKGGTPVCRARCFPVGKVLDILLPDFLDCTARTSLDMLAKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVAKLDDKTTVFLVPPSEFSEKVLKVPGKLSISGVILRLEYPTLNHGPMPIEGVMKNENLLSYNENAFNPNSSFPSVRIPPPSISEYGNSGISNHSFLGNKFPAAPSVSDSARALVSMPESHDDRSRSYPPLPPQTSGPNWSSHNLQNFRSLPMQLSSAASEPIAEERQPIIPRPDINSAHHSNAISGIPLSMPVGALEPEQLVRLAETLLEQRRQSGSSLSSSAFSDPRQNRFDGSDTSQRYAAENNLVNSEFSAPQLSQLLQSQMSNVALPPQTVQREPQSEVNGNQQFRDSGSLQATLQLASALLHQLQQGKPS* 906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1698 905 PANTHER RNA RECOGNITION MOTIF-CONTAINING 18 895 - -
Lja6g1698 905 SUPERFAMILY RNA-binding domain, RBD 171 253 IPR035979 GO:0003676
Lja6g1698 905 MobiDBLite consensus disorder prediction 803 826 - -
Lja6g1698 905 MobiDBLite consensus disorder prediction 149 173 - -
Lja6g1698 905 Gene3D - 34 126 IPR012677 -
Lja6g1698 905 MobiDBLite consensus disorder prediction 122 142 - -
Lja6g1698 905 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 179 252 IPR000504 GO:0003723
Lja6g1698 905 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 114 IPR000504 GO:0003723
Lja6g1698 905 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 244 IPR000504 GO:0003723
Lja6g1698 905 MobiDBLite consensus disorder prediction 701 734 - -
Lja6g1698 905 SUPERFAMILY RNA-binding domain, RBD 35 127 IPR035979 GO:0003676
Lja6g1698 905 SMART rrm1_1 50 117 IPR000504 GO:0003723
Lja6g1698 905 SMART rrm1_1 180 248 IPR000504 GO:0003723
Lja6g1698 905 MobiDBLite consensus disorder prediction 1 19 - -
Lja6g1698 905 MobiDBLite consensus disorder prediction 316 335 - -
Lja6g1698 905 MobiDBLite consensus disorder prediction 121 173 - -
Lja6g1698 905 MobiDBLite consensus disorder prediction 1 46 - -
Lja6g1698 905 MobiDBLite consensus disorder prediction 252 291 - -
Lja6g1698 905 MobiDBLite consensus disorder prediction 252 266 - -
Lja6g1698 905 Gene3D - 165 260 IPR012677 -
Lja6g1698 905 MobiDBLite consensus disorder prediction 28 46 - -
Lja6g1698 905 PANTHER RNA-BINDING PROTEIN SPENITO 18 895 - -
Lja6g1698 905 Pfam SPOC domain 501 615 IPR012921 -
Lja6g1698 905 CDD RRM3_Spen 51 120 - -
Lja6g1698 905 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 121 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1698 Lja-Chr6 44059111 44070054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1698 50 251 Eukaryotic Initiation Factors Gene Family AT1G22760 24.057 2.72e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1698 - - lja:Lj0g3v0132489.1 1451.8