Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1694 ATGGCGCATAGGTTGCTCAGGGACCATGAAGCCGACGGTTGGGAACGCTCCGACTTCCCTATCATCTGTGAATCATGCCTCGGCGATAGCCCTTATGTTCGAATGACAAAAGCCGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTTACTGTTTTTAGATGGAGACCTGGTCGGGATGCAAGATATAAGAAAACTGAGATCTGCCAGACATGTAGTAAATTGAAAAATGTTTGTCAAGTGTGCCTTCTGGATCTTGAATATGGACTTCCAGTTCAAGTCCGGGACACAGCTCTCAGTATCGATTCCAATGATGCAATTCCAAAGAGTGATGTTAATAGGGAGTTTTTTGCTGAAGAGCATGACCGCCGGGCTAGAGCTGGTCTAGATTATGAATCCTCTTATGGTAAAGTACGTCCTAATGATACTATACTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGAGCGCACATTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGGGGAGCTGAGTGTCCTTATAGACATGAGATGCCGGTGACTGGGGAGCTGTCTCAACAAAATATCAAAGATCGTTACTATGGGGTGAATGATCCAGTGGCTATGAAGCTACTTGGCAAGGCAGGAGAGATGGCAACTCTGGATGCTCCCGAGGATGAGAGCATCAAAACTCTTTATGTTGGAGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATAACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACCTACACAACCCGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCGCCAACAAACTGGTTATCAAGGGCCTGAGGCTAAAGCTTATGTGGGGCAGGCCTCAGTCAGCAAAACCCGAGTCCGATGGCTCGGATCAAGCAAGGCAGCAGGCATCTGTGGCTCATAGTGGATTGTTGCCTCGAGCTGTGATATCACAGCAGCAGAACCAGGACCAAACCCAAGGAATGGTTTACTATAACAATCCACCTCCGCAGGGAAGAAGCTACTACCCTTCAATGGATCCTCAGAGAATGGGTGCGGTTACTGCAAACCAAGACAGTCCTCCTGGCGGACCTTCTGGGTCAGGGGAGAACAAACCCGGGCCAGAGAAGCAGCCAATGCAACATTATCCCCGTCCAATGATGCCGCCTCCACCTGGCCAATATCATCATCATCAGTATTATCCTCCATATGGTGGTTATATGCAACAACCAGTTCCCCCTTATCAACAGTATCCACCACAATACAATGCTGTCGTGGCTCCATCCCAGCCTCCAGCTGCAAATCATCCCTATCAGCATTCTATGCAACCAGGGTCTTCACAGACGGGGTCTGCACCTGCTGGGCCTGCACCAGCCGAAACTGGAACATCAGCGTCAGGGTCTCAGCAGCAATGA 1458 0.4856 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREFFAEEHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMATLDAPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELANKLVIKGLRLKLMWGRPQSAKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGMVYYNNPPPQGRSYYPSMDPQRMGAVTANQDSPPGGPSGSGENKPGPEKQPMQHYPRPMMPPPPGQYHHHQYYPPYGGYMQQPVPPYQQYPPQYNAVVAPSQPPAANHPYQHSMQPGSSQTGSAPAGPAPAETGTSASGSQQQ* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1694 485 MobiDBLite consensus disorder prediction 393 411 - -
Lja6g1694 485 MobiDBLite consensus disorder prediction 306 320 - -
Lja6g1694 485 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Lja6g1694 485 Pfam Torus domain 147 194 IPR032297 -
Lja6g1694 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Lja6g1694 485 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 461 - -
Lja6g1694 485 MobiDBLite consensus disorder prediction 301 321 - -
Lja6g1694 485 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Lja6g1694 485 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 461 IPR039171 GO:0003723
Lja6g1694 485 MobiDBLite consensus disorder prediction 448 468 - -
Lja6g1694 485 Gene3D - 212 310 IPR012677 -
Lja6g1694 485 SMART rrm1_1 229 297 IPR000504 GO:0003723
Lja6g1694 485 MobiDBLite consensus disorder prediction 334 354 - -
Lja6g1694 485 Gene3D - 149 210 - -
Lja6g1694 485 MobiDBLite consensus disorder prediction 365 379 - -
Lja6g1694 485 MobiDBLite consensus disorder prediction 334 485 - -
Lja6g1694 485 CDD RRM_RBM22 227 300 - -
Lja6g1694 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Lja6g1694 485 SUPERFAMILY RNA-binding domain, RBD 221 309 IPR035979 GO:0003676
Lja6g1694 485 SMART c3hfinal6 157 183 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1694 Lja-Chr6 44025667 44030936 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1694 221 409 C2H2 Transcription Factor Family AT2G19380 26.291 1.11e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1694 K12872 - gmx:100779917 791.186