Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1679 ATGGATTCGTTTGAACCTGATGGTAATGGGAAGGAGGAGAGTTTGCCGTTGCCGCCACCGCCTCCGGTTCTCCCTTCTGATGTGGTACCTCTAAAAGCAGAGGAGGTGCTTCCTGCTGCTCCACCTCCTGAACCGGTGAAGAAGAAAACACCTGCGCGTCTTCCGATTGCTAGACGTGGTCTGGGAACTAAAGGGACGAAAATACCGCTTCTGACCAACCACTTCAAAGTTACTTGCACCAACAATGATGGACACTTCTTCCATTACAGTGTGAATTTTACCTATGAAGACGGGCGCCCTGTAGAAGGTAAGGGTGTAGGGAGGAAGATAATGGACAAGGTGCAAGAGACTTATCAGTCTGACTTAAATGGCAAGGACTTTGCGTATGATGGGGAGAAGAGTCTGTTCACTATTGGCTCCCTTCCTAGAAACAAGCTTGAGTATGAAGTTGTTCTGGAGGATGTGACATCAAACAGAAACAATGGCAATTGTAGCCCTCCAAACGGTCATGGGGAGGACAATGAGACTGACAAGAAGAGGATGCGGCGCCCTTATCGTGCCAAGACGTTTAAAGTTGAGATTAGCTATGCTGCCAAAATTCCAATGCAGGCCATTGCCAATGCCTTACGAGGGCAGGAGTCAGAAAACTTCCAAGAAGCCATTCGAGTGCTAGATATCATATTGAGGCAGCATGCGGCTAAGCAAGGCTGTCTGCTTGTACGTCAAAACTTCTTTCACAATGATCCCAAAAACTTTGCTGATGTTGGAGGCGGTGTTCTAGGCTGTAGAGGATTCCATTCTAGTTTTAGAACTACACAGAGTGGCCTGTCTCTGAACATAGATGTCTCCACTACAATGATAGTTCAACCAGGACCAGTGGTAGACTTCTTAATTTCCAATCAAAATGTCAGAGATCCTTTTCAACTTGATTGGACCAAGGCCAAAAGGACGCTGAAAAACCTGAGGATTAAAACCTACCCTTCTAATCAAGAGTTCAAAATTACTGGATTCAGTGAACTCCCCTGCAAAGAACAGACCTTTTCTCTGAGGAAAAAAGGTGATGGTGATGATAGTGAGGAAGTTGCTGTCTATGATTATTTTGTTAATACTCGTAAGATAGAACTCCGCTACTCTGGTGACCTGCCATGTATTAATGTGGGGAAGCCTAAACGGCCCACATTTTTCCCCATTGAGCTCTGTGAATTGGTATCCCTGCAACGATATACCAAAGCTTTGACCACACTTCAACGGTCCTCATTGGTGGAAAAGAGCAGGCAGAAGCCACAAGAGCGAATGAATGTTTTGACTGATGCACTGAAAATTAGCAACTATGGTGCTGAACCTTTGCTAAAGAATTGTGGAATTTCTATAAGCAATGGCTTTACCCAAGTCGAGGGTCGTGTTTTGCCTGCTCCAAGGTTGAAGTTTGGCAATGGTGAAGATATGAATCCTAGGAATGGAAGATGGAATGTGGCCAGGATGAAATTTGTGCGGCCAACTGCAAAGGTTGAAAGATGGGCTGTGGCCAACTTTTCTGCACGTTGTGATGTTCAAGCACTTGTGAGAGATCTAATGAGAATTGCAGATATGAAAGGAATTCAAATGGACCAACCATTTGATGTGTTTGCTGAAAGTCCTCAGTTTAGGCGTGCCCCACCTATGGTTAGAGTGGAGAAGATGTTTGAGGACATCCAATCAAAACTTCCTGGGGCTCCTCAGTTCCTTCTCTGTTTGCTTCCTGATAGGAAAAACTGTGAAATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGACTTTGGAATAGTTAATCAGTGCATGTGTCCTTTAAGGGTCAATGACCAGTATCTGACAAATATTATGCTGAAGATAAATGCTAAGCTTGGTGGGTTGAATTCATTGTTAAGTGTGGAATTGTCTCCTTCTCTTCCCATTGTTTCCAAAGCTCCCACCCTCATTCTAGGCATGGATGTGTCTCATGGCTCACCGGGACAGACTGATATTCCTTCAATTGCTGCGGTGGTCAGCTCCAGAGAGTGGCCTCTGATATCAAAGTATAGGGCTTGTGTTCGTACCCAGTCTGCAAAGGTTGAAATGATAGATAACTTGTTCAAGCAAGTGTCAGAAAAGGAAGATGAAGGCATCATGAGGGAACTTTTGCTTGATTTCTATCTAAGTTCTGGGAAGAGAAAGCCAGACAATATAATCATTTTCAGGGATGGAGTCAGTGAGTCGCAATTCAATCAAGTGTTGAATGTTGAGCTTGATCAAATCATGGAGGCATGTAAATTTCTTGATGATAAGTGGGAGCCAAAATTCGTTGTAATTGTTGCTCAGAAGAACCACCACACAAGGTTCTTCCAGCCTGGCTCACCTGACAATGTCCCACCTGGAACTATTATTGACAATAAAATTGGCCATCCCAGAAATTATGATTTCTACCTTTGTGCGCATGCTGGAATGATTGGTACCAGTAGGCCTACACACTACCATGTGCTGCTAGATCAGGCTGGTTTCTCTCCTGATGAACTGCAGGAGCTTGTACACAGTCTATCATATGTGTATCAGAGGAGCACCACTGCAATTTCTGTTGTTGCTCCTATATGCTATGCCCACTTGGCTGCAACCCAGTTGGGCCAGTTCATGAAATTCGAGGACAAATCTGAGACATCATCAAGCCATGGTGGACTGAGTGCTGCTGGAGCTGTTCCTGTCCCTCAACTGCCCAAATTGCAGGATAATGTTTGCAACTCTATGTTCTTTGTTTGA 2766 0.4443 MDSFEPDGNGKEESLPLPPPPPVLPSDVVPLKAEEVLPAAPPPEPVKKKTPARLPIARRGLGTKGTKIPLLTNHFKVTCTNNDGHFFHYSVNFTYEDGRPVEGKGVGRKIMDKVQETYQSDLNGKDFAYDGEKSLFTIGSLPRNKLEYEVVLEDVTSNRNNGNCSPPNGHGEDNETDKKRMRRPYRAKTFKVEISYAAKIPMQAIANALRGQESENFQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIVQPGPVVDFLISNQNVRDPFQLDWTKAKRTLKNLRIKTYPSNQEFKITGFSELPCKEQTFSLRKKGDGDDSEEVAVYDYFVNTRKIELRYSGDLPCINVGKPKRPTFFPIELCELVSLQRYTKALTTLQRSSLVEKSRQKPQERMNVLTDALKISNYGAEPLLKNCGISISNGFTQVEGRVLPAPRLKFGNGEDMNPRNGRWNVARMKFVRPTAKVERWAVANFSARCDVQALVRDLMRIADMKGIQMDQPFDVFAESPQFRRAPPMVRVEKMFEDIQSKLPGAPQFLLCLLPDRKNCEIYGPWKKKNLADFGIVNQCMCPLRVNDQYLTNIMLKINAKLGGLNSLLSVELSPSLPIVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSREWPLISKYRACVRTQSAKVEMIDNLFKQVSEKEDEGIMRELLLDFYLSSGKRKPDNIIIFRDGVSESQFNQVLNVELDQIMEACKFLDDKWEPKFVVIVAQKNHHTRFFQPGSPDNVPPGTIIDNKIGHPRNYDFYLCAHAGMIGTSRPTHYHVLLDQAGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGLSAAGAVPVPQLPKLQDNVCNSMFFV* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1679 921 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 920 - -
Lja6g1679 921 Gene3D paz domain 284 408 - -
Lja6g1679 921 MobiDBLite consensus disorder prediction 13 27 - -
Lja6g1679 921 SUPERFAMILY PAZ domain 285 444 IPR036085 GO:0005515
Lja6g1679 921 Gene3D - 641 921 IPR036397 GO:0003676
Lja6g1679 921 CDD PAZ_argonaute_like 290 403 - -
Lja6g1679 921 MobiDBLite consensus disorder prediction 1 50 - -
Lja6g1679 921 Pfam N-terminal domain of argonaute 66 228 IPR032474 -
Lja6g1679 921 ProSiteProfiles Piwi domain profile. 574 882 IPR003165 GO:0003676
Lja6g1679 921 SMART Piwi_a_2 574 882 IPR003165 GO:0003676
Lja6g1679 921 Pfam Piwi domain 575 882 IPR003165 GO:0003676
Lja6g1679 921 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 2 920 - -
Lja6g1679 921 ProSiteProfiles PAZ domain profile. 315 404 IPR003100 GO:0005515
Lja6g1679 921 Pfam Argonaute linker 1 domain 240 288 IPR014811 -
Lja6g1679 921 CDD Piwi_ago-like 448 876 IPR045246 -
Lja6g1679 921 Pfam Mid domain of argonaute 483 537 IPR032473 -
Lja6g1679 921 Gene3D - 468 635 - -
Lja6g1679 921 Pfam Argonaute linker 2 domain 430 476 IPR032472 -
Lja6g1679 921 MobiDBLite consensus disorder prediction 157 180 - -
Lja6g1679 921 SUPERFAMILY Ribonuclease H-like 559 880 IPR012337 -
Lja6g1679 921 SMART DUF1785_2 238 290 IPR014811 -
Lja6g1679 921 Pfam PAZ domain 294 420 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1679 Lja-Chr6 43859042 43867658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1679 58 920 Eukaryotic Initiation Factors Gene Family AT5G43810 34.521 4.72e-160 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1679 K11593 - gmx:100820376 1575.84