Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1677 ATGCCAGCAAAGAAGTCTCGCATGGAGAGGATGTCAGCTATGAGGCGCAAGAGAAGAATTTCTTGTCAAGGACATAAAAGACTGAAATTATCTAGTAATAGCCTGCCATACTCAGCACATGTTAAAGCTGTACCAGAGGCACCTGCAATATCTGGCGTTCCAAATCATTTACAAAGTGGAAAATTTGGAAGTGTCATGAAGGACACAGAGGCCCTTATACCCCGAAAAATGCAATTACTGGGGCCTTTCTTTGCTAAGTATCCTAAACCTTTTACTCAATCATTAAAAGTGGCAATGAACCACGACGAAGAGAGTAATAAGTTAGAAAATAAAAAAGGTACCGTTATATCACATGAAAAGGTATACTTGGAAGAGGAGAGCATTAAAAATGATGCTTCTGCAGCACAGCCTGTTGTGGTTATTGATTCGGATGATAGAGATGAAAAATCTTCTCTTCCATTTAATGAAGTAATGTTGCCAAAATCTCTCCATTCTCCTGCATTGAATATGATTGATTACCGTGCTCCTACTACTTATCATGGAAAAAGTGAAGATCTACCAACTCTCGCTGCTAAAGATAACACTCAGAGAGCTAAAGGTGTTTATGTTGGTGTACAGGAGGAAGAAGATTTTGAGCTTGATACTGAAGATGATGATGGGCTTGATGATATTTGGAGGGAAATGGCAATGGCAGTTGAATGTTCTAAAGATGTTTCTGTGAATCACCCGCCTGAGGAAGAAGTTGAAAAAGATGACGACTGTGATCATTCTTTTGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGTGGGATCATTGACAGAGGAATTGAAACCATATTTGACTTCCAGTACAAGGTTAAAATCAGCAGCACTAGGTCTAGAACTTACAAGGCTGATTCATGGACCAAAGCAAAAGCTGATGTATGTGCAATTAAGATTGCTGAAGATGACATCATGTTAACTGACATCTCAGCACATCCTAGGCATATGAAACAAATGAAGTCTCATCAAATAGAAGGATTCAATTTTCTCGTCAGAAACCTTGTAGGTGACAATCCTGGGGGCTGCATCTTGGCCCATGCTCCAGGTTCTGGGAAGACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTACCCAAATGCTAGACCTCTAGTGGTGCTTCCTAAGGGAATACTATCTACATGGAAAAAGGAGTTTCAGACATGGCAAGTGGAGGACATACCACTTTACGATTTTTACACTGTGAAGGCAGACAGTAGATCTCAGAAGTTGGAAGTTTTGAAACAATGGGTTGAACATAAGAGCATCCTTTTCTTGGGGTACAAGCAGTTCTCTTCAATTGTATGTGATAATAGTATGGACAGCGTATCAATATCTTGCCAAGATATATTACTGAAGGTACCTTCAATTCTCATTTTAGATGAAGGACATAACCCACGGAATGAAAACACCAATATGGTGCACTCCCTTGCGAAAGTAAAAACACAGAGAAAAGTTGTACTGTCAGGAACTTTGTATCAAAACCATGTCAAGGAGGTATTTAATATCTTGAATCTCGTACGACCAAAGTTTCTAAAGATGGAAACATCTAGGCCTATTGTCAAGCGCATTCATAGTAGAGTACATATACCGGGCAAAAAAACTTTCTTTGATTTGGTTGAGGACACTTTGCAGAAGGACCCTGATTTTAAAAGGAAAATAGCTGTTATACAAGATTTGCGTGAAATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTGGTTGATTTTACAGTGATACTTAACCTTACCCCAAGACAGAAGCATGAAATAGAGAAATTAAAGAATATATCTAGAAAGTTCAAGGTATCTTCTCTGGGCAGTGCACTTTATCTTCACCCTAGATTGAAACCTGTTGTGGAAGAATGTAGTGAAAATTGTGTATCTGATCAAATGGTGGATGATTTAATAGAGAAATTGGATGTGAAAGATGGTGTGAAGTCGAAATTCTTCCTGAACATTCTAAACTTGTGTGAATCATCTGGGGAGAAGCTTCTGGTGTTCAGTCAATATCTCTTACCTTTGAAATACTTGGAAAGGTTGACTTGGAAACGGAAAGGTTGGTGTGTTGGGAAAGAAATCTTTGGAATCTCAGGGGAATCTAGCTCTGAGCAAAGGGAGTGGGCAATGGAAAGATTTAACAATTCACCTGATGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGCATATCCTTGGTTGGGGCATCCCGAGTACTTATTTTGGATGTTCATCTGAACCCGTCTGTTACTCGCCAAGCTATTGGTCGTGCATTCCGACCAGGGCAGACAAAGAAAGTCTTTGTGTATCGGTTGATAGCAGCTGATTCTCCTGAAGAGGAAGATCACATTACTTCTTTCAAGAAGGAACTGATTTCAAAGATGTGGTTTGAGTGGAATGAGTATTGTGGTGATAGAGCCTTCCAAGTTGAGACTACTAGTGCCAAAGAATGTGGTGATTTGTTCCTTGCGAGTCCAATGTTAGGAGAAGACATAAAAGCTCTGTATAAAAGTTAG 2601 0.3956 MPAKKSRMERMSAMRRKRRISCQGHKRLKLSSNSLPYSAHVKAVPEAPAISGVPNHLQSGKFGSVMKDTEALIPRKMQLLGPFFAKYPKPFTQSLKVAMNHDEESNKLENKKGTVISHEKVYLEEESIKNDASAAQPVVVIDSDDRDEKSSLPFNEVMLPKSLHSPALNMIDYRAPTTYHGKSEDLPTLAAKDNTQRAKGVYVGVQEEEDFELDTEDDDGLDDIWREMAMAVECSKDVSVNHPPEEEVEKDDDCDHSFVLKDDLGYVCRVCGIIDRGIETIFDFQYKVKISSTRSRTYKADSWTKAKADVCAIKIAEDDIMLTDISAHPRHMKQMKSHQIEGFNFLVRNLVGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQKLEVLKQWVEHKSILFLGYKQFSSIVCDNSMDSVSISCQDILLKVPSILILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKEVFNILNLVRPKFLKMETSRPIVKRIHSRVHIPGKKTFFDLVEDTLQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVILNLTPRQKHEIEKLKNISRKFKVSSLGSALYLHPRLKPVVEECSENCVSDQMVDDLIEKLDVKDGVKSKFFLNILNLCESSGEKLLVFSQYLLPLKYLERLTWKRKGWCVGKEIFGISGESSSEQREWAMERFNNSPDAKVFFGSIKACGEGISLVGASRVLILDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLIAADSPEEEDHITSFKKELISKMWFEWNEYCGDRAFQVETTSAKECGDLFLASPMLGEDIKALYKS* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1677 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 827 IPR027417 -
Lja6g1677 866 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 349 528 IPR014001 -
Lja6g1677 866 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 15 865 IPR044567 GO:0080188
Lja6g1677 866 Pfam Helicase conserved C-terminal domain 678 789 IPR001650 -
Lja6g1677 866 Pfam SNF2-related domain 355 618 IPR000330 GO:0005524|GO:0140658
Lja6g1677 866 PANTHER PROTEIN CHROMATIN REMODELING 35 15 865 - -
Lja6g1677 866 CDD SF2_C_SNF 664 801 - -
Lja6g1677 866 SMART ultradead3 331 545 IPR014001 -
Lja6g1677 866 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 676 842 IPR001650 -
Lja6g1677 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 530 IPR027417 -
Lja6g1677 866 Gene3D - 303 549 IPR038718 -
Lja6g1677 866 SMART helicmild6 705 790 IPR001650 -
Lja6g1677 866 Gene3D - 598 856 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1677 Lja-Chr6 43824097 43831449 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1677 687 821 RAD5 or RAD16-like Gene Family AT5G43530 36.029 1.23e-15 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja6g1677 SNF2_N 9.5e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1677 K10875 - gmx:100780454 1244.95