Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1666 ATGGGAAACTCTTGTGCAAAACCAGTTGCTCATGTCTCTTCCTCTAGTTTTGCTGGAAATAAGAGGCCACAAAGTAGGCCAAAGCAGCATTCAAATTCTCTTGAGCAAAAAGCTGCTATGCAAATTTCAGAAGCAAATGTTGAGAAATCCATCTCCAATAAACTTAAGTCATTCAGCTTCAATGATCTGAAGGAGGCCACCAAGAACTTCCGGCAAGAAAACTTAATCGGAGAGGGAGGGTTTGGGCGTATCTTCAAGGGATGGATTGATCAGAACACATATGCTCCCACAAAACCAGGGAGTGGGATGGTAGTGGCCATTAAGAATCTTAAGCCAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCAGAAGTCAATTATCTTGGGCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTATTGCTTACAAGGTAAAAACAGGCTTCTAGTATATGAATTCATGCCAAAAGGAAGCTTGGAGAATCATTTGTTCCGAAAAGGTGTTCAACCAATCCCTTGGACTACACGTGTTAACATTGCAATTGGCGTAGCAAGAGGCTTAGCATACTTACATTCCCTGAATGCAAATGTCATATTTCGTGATTTAAAGGCTTCCAATATCCTAATTGATTCAGATTTCGGTCCGAGACTTTCAGATTTTGGCTTGGCAAGGGATGGTCCTACCGGAGATAACACTCACGTTTCAACCAGAGTTATTGGAACTCAAGGTTATGCTGCACCAGAGTATGTCGCTACAGGTCATTTGACACCAAGGAGTGATGTATACAGCTTCGGTGTTGTCTTGTTGGAGTTACTAACCGGAAGACGAGCACTAGAAGACGATAGACCTGGAGTTTCAGAGGAAACATTAGTGGATTGGGCAATGCCTTTTCTGAGTGATAGCAGAAGGGTTTTGAGAATCATGGACACTAGGTTGGGGGGTCAATACTCAAAGAAAGGAGCACAAGCTGCAGCTTCACTTGCATTGCAATGCTTGAATACAGATCCAAAATTTAGACCACCTATGGTAGAGGTTCTGGCAACATTGGAAGGACTTCATTCCTTGAATTCAATCCCAAGGACACCAAAATCTGGAATTGAAAGTCATACAAACAGGCATTTTGGTCATGCACAAAAGTAG 1146 0.425 MGNSCAKPVAHVSSSSFAGNKRPQSRPKQHSNSLEQKAAMQISEANVEKSISNKLKSFSFNDLKEATKNFRQENLIGEGGFGRIFKGWIDQNTYAPTKPGSGMVVAIKNLKPESFQGHKEWLAEVNYLGQLHHENLVKLIGYCLQGKNRLLVYEFMPKGSLENHLFRKGVQPIPWTTRVNIAIGVARGLAYLHSLNANVIFRDLKASNILIDSDFGPRLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRALEDDRPGVSEETLVDWAMPFLSDSRRVLRIMDTRLGGQYSKKGAQAAASLALQCLNTDPKFRPPMVEVLATLEGLHSLNSIPRTPKSGIESHTNRHFGHAQK* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1666 381 Gene3D Transferase(Phosphotransferase) domain 1 156 366 - -
Lja6g1666 381 PANTHER TYROSINE KINASE FAMILY PROTEIN 17 377 - -
Lja6g1666 381 Gene3D Phosphorylase Kinase; domain 1 44 155 - -
Lja6g1666 381 MobiDBLite consensus disorder prediction 359 381 - -
Lja6g1666 381 Pfam Protein tyrosine and serine/threonine kinase 73 350 IPR001245 GO:0004672|GO:0006468
Lja6g1666 381 PANTHER OS01G0588500 PROTEIN-RELATED 17 377 - -
Lja6g1666 381 MobiDBLite consensus disorder prediction 1 38 - -
Lja6g1666 381 ProSiteProfiles Protein kinase domain profile. 70 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1666 381 CDD STKc_IRAK 76 354 - -
Lja6g1666 381 SUPERFAMILY Protein kinase-like (PK-like) 47 357 IPR011009 -
Lja6g1666 381 ProSitePatterns Protein kinases ATP-binding region signature. 76 108 IPR017441 GO:0005524
Lja6g1666 381 SMART serkin_6 70 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1666 381 MobiDBLite consensus disorder prediction 8 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1666 Lja-Chr6 43684784 43687979 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1666 7 351 Glycoside Hydrolase AT3G07070 47.009 5.92e-102 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja6g1666 PK_Tyr_Ser-Thr 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1666 - - gmx:102664409 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1666 6 43684784 43687979 Lja6g1666 6 43684784 43687979 ECH