Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1659 ATGGCTTGTAATGAACCAATCCCCTCAGCTACACGAGCGAAAATTGCAATTGGTGTAGCAAGAGGAATAACATTCTTGCATTCCTTCAAGGAACATCTTATATATCTTGATTTGAAGCCTGCCAGCATCCTACTTGATTCAGATTTCAATGTAAAGCTTTCAATTTGTGGTTTGACGCCTGAGTTGAAAAGGGCTCTAGTTTGTTATACACCAAAGAGTGAGGTATTCAGCTTTGGTGCTGTGTTGTTAGCGTTATTAATTGGAAGCCGCGCATTTGAGGAGCATGTTGCTTCAGAGAAAAGAAGAGAAGTTTTTAGAATCAAGGAGGCATGGTTGGGTGATCTATTCTCCAAGGAAGGAGCAAAAGTTGCCCTTGCACTTGCATTTAAATGCATGAGTCATGAACCGGAGTTTAGACCACCTATGGCTGATGTTCTAGCAGCATTGGAAGGACTTCATTCCTTGGAAACAATCCCAAGGACACTACAATATGAAACAGAAAGTCATGCAACAGAACCGAAATGGGTACTAATAAGTACCAACGAAGCTGGAAATAAGAAGCCTCTAAGTGAGACAAAGCAGTGTTGTAACTCTTCAGAACATAAAGCTGTTTTGCGAACTTCCATCTCCAATAAACTCAAGTCATTCAGCTTGAATGATCTGAAGAAGGCCACCAAGAACTTCCGACAAGAAAATTTACTTGGGGAGGGACGCGATGGACTTGTCTTCAAAGGGTGGATTGATAAGACCACTTATGCTCCCACAAAACCAGGGAGTGGAATGGTAGTGGCCATTAAAAATCTTAAGCCAGAAAGCTTTGAAGGCGAATGGCTTGAAGAAGTCAATTATCTAGAGCAGCTTCCCCATGAAAATCTGGTGAAAGTTATTGGTTATTGCTTGGAAGAAGGTGGTGAACCAATCGCCTGGACTACACGCGTTAACATCGCAATTGGTGTAGCTAAAGGAATAGCATTCTTGCATTCCCTGAAGGAAAATGTTTTAGTTATTGATTTAAGGACTACCAGTATCCTACTTGATTCGGATTTCAATGCAAAGCTTTCGGGTTTTTGCTTGGTAAGATATGATCTTCGTAGACAGGCCTTCAAATTTCTTACACGCCATGCAGGTTATTACGGGGCGGAAGAGTGTGTTACTGCAGCTGCAGGTATAGTTCATTTGTCCTAA 1185 0.4169 MACNEPIPSATRAKIAIGVARGITFLHSFKEHLIYLDLKPASILLDSDFNVKLSICGLTPELKRALVCYTPKSEVFSFGAVLLALLIGSRAFEEHVASEKRREVFRIKEAWLGDLFSKEGAKVALALAFKCMSHEPEFRPPMADVLAALEGLHSLETIPRTLQYETESHATEPKWVLISTNEAGNKKPLSETKQCCNSSEHKAVLRTSISNKLKSFSLNDLKKATKNFRQENLLGEGRDGLVFKGWIDKTTYAPTKPGSGMVVAIKNLKPESFEGEWLEEVNYLEQLPHENLVKVIGYCLEEGGEPIAWTTRVNIAIGVAKGIAFLHSLKENVLVIDLRTTSILLDSDFNAKLSGFCLVRYDLRRQAFKFLTRHAGYYGAEECVTAAAGIVHLS* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1659 394 Gene3D Transferase(Phosphotransferase) domain 1 303 385 - -
Lja6g1659 394 SUPERFAMILY Protein kinase-like (PK-like) 205 368 IPR011009 -
Lja6g1659 394 SMART tyrkin_6 228 393 IPR020635 GO:0004713|GO:0006468
Lja6g1659 394 Gene3D Transferase(Phosphotransferase) domain 1 63 168 - -
Lja6g1659 394 Gene3D Transferase(Phosphotransferase) domain 1 1 62 - -
Lja6g1659 394 PANTHER TYROSINE KINASE FAMILY PROTEIN 303 376 - -
Lja6g1659 394 SUPERFAMILY Protein kinase-like (PK-like) 5 162 IPR011009 -
Lja6g1659 394 ProSiteProfiles Protein kinase domain profile. 228 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1659 394 PANTHER OS01G0588500 PROTEIN-RELATED 5 59 - -
Lja6g1659 394 PANTHER OS01G0588500 PROTEIN-RELATED 69 172 - -
Lja6g1659 394 PANTHER OS01G0588500 PROTEIN-RELATED 186 301 - -
Lja6g1659 394 PANTHER OS01G0588500 PROTEIN-RELATED 303 376 - -
Lja6g1659 394 Pfam Protein tyrosine and serine/threonine kinase 231 303 IPR001245 GO:0004672|GO:0006468
Lja6g1659 394 Gene3D Phosphorylase Kinase; domain 1 197 302 - -
Lja6g1659 394 ProSiteProfiles Protein kinase domain profile. 1 156 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1659 394 PANTHER TYROSINE KINASE FAMILY PROTEIN 5 59 - -
Lja6g1659 394 PANTHER TYROSINE KINASE FAMILY PROTEIN 69 172 - -
Lja6g1659 394 PANTHER TYROSINE KINASE FAMILY PROTEIN 186 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1659 Lja-Chr6 43549750 43553663 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1659 179 379 Glycoside Hydrolase AT3G07070 34.934 1.89e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lja6g1659 PK_Tyr_Ser-Thr 3.5e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1659 - - lja:Lj2g3v2996210.1 275.018