Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1658 ATGGCTACGGGAACTCTTGGTCAAATCAATGCGATTGAATCTCCTTTGGTGGGATCCAGAAGCGTTGATTGTTTCGAGAAGTTGGAACAAATTGGCGAGGGCACATATGGTCAAGTTTACATGGCTAAAGAGCATAAGACGGGTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAAGGGTTTCCCATAACTGCTATACGTGAAATCAAAATTCTAAAGAAACTCCACCATGAAAATGTAATCAAGTTGAAAGAAATAGTGACTTCTCCAGGACCCGAGAAAGATGAACAAGGGAGGCCAGATGGTAATAAATACAAAGGTGGCATTTACATGGTCTTTGAATACATGGACCATGATTTGACAGGTCTTGCTGACCGACCTGGGATGAGATTTACTGTCCCTCAAATTAAGTGTTACATGAGACAGCTTTTGACGGGGCTTCATTATTGTCATGTAAATCAAGTACTTCATCGTGATATCAAAGGCTCAAATCTTCTTATAGATAATGAAGGCAATTTGAAGCTTGCAGATTTTGGATTGGCTCGATCATTTTCTAATGAGCACAATGCAAATCTTACAAACCGTGTCATCACGTTATGGTACAGACCCCCTGAGTTGCTGCTCGGGGCAACAAGGTATGGGCCAGCTGTAGATATGTGGTCTGTTGGGTGCATTTTTGCCGAGCTTCTTCATGGGAAGCCTATCTTTCCTGGAAAAGATGAGCCAGAACAATTAAATAAGATTTTTGAGCTGTGTGGAGCACCAGATGAGGTGAACTGGCCTGGTGTTTCTAAGACTCCATGGTATAATCAATTTAAGCCATCAAGACCCATGAAAAGGCGTTTGAGGGAAGTTTTCAGACATTTTGATCGTCATGCTCTGGAATTGTTAGAGAAGATGCTGACACTTGATCCTTCTCAGAGAATTACTGCCAAGGATGCACTTGATGCTGAGTATTTCTGGGCTGATCCATTACCATGTGATCCCAAGAGTTTACCCAAGTATGAGTCATCACATGAGTTCCAAACCAAGAAAAAGCGTCAGCAGCAACGGCAAAATGAAGAAAATGCCAAGCGTCTTAAATTGCAGCATCCACAGCCGCATACTCGACTTCCCCCAATTCAGCAGGCTGGGCAACATGGTCAAATGCGGCAAGGTCCTAACCACCCTATTCATGGCTCTCAACCAGCAGTTGCTGCAGGGTCTAACCATCATTACAGTAAGCCTCGAGGTCCTTCTGGTGGGCCAGGAAGATATCCTGCTGGTGGGAACCCCAGTGGGGGGTACAATCACCCAAATCGTGGAGGGCAAGGCGGCGGCAGTTATGGCAGTGGGCCATATCCTCCTCAAGGACGGGGCGCACCTTATGCATCTAGTGGCATGCCTGGTGGGGGTCCTCGTGGTGGAGGTGGTAGTGGCTATGGAGTTGGAGCTCCAAGTTATCCTCAAGGTGGTCCATATGGCGGTTCTGCAGCTGGTCGTGGCTCAAACATGATGGGTGCAAACCGTAACCAGCAGTATGGTTGGCAGCAGTAA 1548 0.4612 MATGTLGQINAIESPLVGSRSVDCFEKLEQIGEGTYGQVYMAKEHKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGATRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKTPWYNQFKPSRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRITAKDALDAEYFWADPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEENAKRLKLQHPQPHTRLPPIQQAGQHGQMRQGPNHPIHGSQPAVAAGSNHHYSKPRGPSGGPGRYPAGGNPSGGYNHPNRGGQGGGSYGSGPYPPQGRGAPYASSGMPGGGPRGGGGSGYGVGAPSYPQGGPYGGSAAGRGSNMMGANRNQQYGWQQ* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1658 515 SUPERFAMILY Protein kinase-like (PK-like) 19 331 IPR011009 -
Lja6g1658 515 SMART serkin_6 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1658 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Lja6g1658 515 ProSiteProfiles Protein kinase domain profile. 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1658 515 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 453 - -
Lja6g1658 515 PANTHER CELL DIVISION PROTEIN KINASE 5 453 - -
Lja6g1658 515 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Lja6g1658 515 CDD STKc_CDK9_like 25 324 - -
Lja6g1658 515 MobiDBLite consensus disorder prediction 337 366 - -
Lja6g1658 515 Gene3D Phosphorylase Kinase; domain 1 13 121 - -
Lja6g1658 515 MobiDBLite consensus disorder prediction 501 515 - -
Lja6g1658 515 MobiDBLite consensus disorder prediction 373 387 - -
Lja6g1658 515 MobiDBLite consensus disorder prediction 335 515 - -
Lja6g1658 515 Gene3D Transferase(Phosphotransferase) domain 1 122 364 - -
Lja6g1658 515 Pfam Protein kinase domain 25 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1658 Lja-Chr6 43542359 43547939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1658 1 515 Core Cell Cycle Gene Families AT5G10270 76.008 0.0 772
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lja6g1658 Pkinase 5.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1658 K08819 - gmx:100793565 938.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1658 6 43542359 43547939 Lja6g1658 6 43542359 43547939 PCT