Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1652 ATGAGTAGCACCACAACAAGTGGGAGTGAGGGTCAAAAAGTGACCAAGCGTCGCCGGTCATCATTATCAGCTGAAGAAGGTAGTAGCGGAGGCAACTCGACAGGAGAAGGTCCTCTGAAGAAAGGCCCCTGGACCTCAGCAGAGGATGAAATTTTGGTTGACTATGTCAAAAAGCATGGGGAAGGGAATTGGAATGCAGTTCAAAAGCATTCAGGACTTGCCCGTTGTGGAAAAAGCTGCCGTCTGCGATGGGCAAATCATTTGAGACCAGATCTGAAAAAGGGTGCATTTACTACGGAGGAGGAGAACCGGATCCTCGAGCTTCATGCTAAAATGGGAAATAAATGGGCTCGAATGGCTGCAGAGTTGCCTGGACGTACAGATAACGAGATAAAGAACTACTGGAACACCAGAATCAAGAGAATGCAACGAGCCGGCTTGCCACTCTACCCCGAGGAAATATGTCGACGGGTGTTCACTGGCAATCAAGAAAACCTAAATGTTGGCACCTTGACAAATGAAGCCACCCATCATGATGATCTCTCACAAACAGACAACAATTTTGTCGCACCTGATGTGGATTTTAGAAATTTCAAACTTCGTCGGGATGTATTATACGAGCCATCAATTTTCGAAATGCCTGAAAACAGCGTGGTTGAGCAAAATCCGGATCCATCCCGTGGTTACATCTTGTTGCCAATGGTGCATCCCTCCAAGCAGCTTCCGGAGTCAGATATGATGCATACTAGTTTGGGCAGTGCTGCTGTGTTTGATCAGTATGGTAATCATACTTATGAGAACACTTCTGACCCTCCTAAGTTGTATGGCAATTATACTTGTGAGAACAATTCTGACTCTTCTCTGTGTGACCCTGTTCTTAGCGTCAGCTATCAGTTTCACGGGGATAACCTGGTTGGCAGCCATGCCACAAATGGCAATAACTCTTCTTCTTCTGCGGCCGTATCCGGGGCCACGAAGTTGGAGCTCCCTTCACTCCAATATTTCGAGACTCAACAAGGTGGCTGGGGCAGGCCTGCACCCCAACTTCCTTCACTTGAGTCTGTTGATACATTGATTTCTCCTCCAGTTGAACTTACTACTCAGTCAGATCCTGTTTCTCCAGAAAGCAGTGGTTTGCTGGAATCTATAATCTACCATTCAAAGAGTTTGAAAGTCTCTAATGTTGATTTGCAAGACACTGTTCCTGTTGAAACAGACAAGAATTTAGCCTCTAATCCTGCAAAGACAGAATGGAATGAACAACTGGAGACACATTCCCCCTTAGGTCAGTCTACTTCAGACTATACTCCTATTAGAATGTGCTTGGTGGATGAGCCTCAATCAGTTGAAACAGAGCATGTGCATGAGGCAGATACAGCTTATAGCTTCAGTAATAAAGAGAATTTGAATCAGATAAATATTTCTAGGCCTGATGCTGTATTTGACTTGGGTTGGTTTGGGAATGATATGTGGCAATGA 1479 0.4517 MSSTTTSGSEGQKVTKRRRSSLSAEEGSSGGNSTGEGPLKKGPWTSAEDEILVDYVKKHGEGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGAFTTEEENRILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPLYPEEICRRVFTGNQENLNVGTLTNEATHHDDLSQTDNNFVAPDVDFRNFKLRRDVLYEPSIFEMPENSVVEQNPDPSRGYILLPMVHPSKQLPESDMMHTSLGSAAVFDQYGNHTYENTSDPPKLYGNYTCENNSDSSLCDPVLSVSYQFHGDNLVGSHATNGNNSSSSAAVSGATKLELPSLQYFETQQGGWGRPAPQLPSLESVDTLISPPVELTTQSDPVSPESSGLLESIIYHSKSLKVSNVDLQDTVPVETDKNLASNPAKTEWNEQLETHSPLGQSTSDYTPIRMCLVDEPQSVETEHVHEADTAYSFSNKENLNQINISRPDAVFDLGWFGNDMWQ* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1652 492 SUPERFAMILY Homeodomain-like 39 135 IPR009057 -
Lja6g1652 492 Gene3D - 40 93 - -
Lja6g1652 492 CDD SANT 43 88 IPR001005 -
Lja6g1652 492 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 23 486 - -
Lja6g1652 492 CDD SANT 96 137 IPR001005 -
Lja6g1652 492 ProSiteProfiles Myb-like domain profile. 36 88 IPR001005 -
Lja6g1652 492 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 143 IPR017930 -
Lja6g1652 492 Gene3D - 96 142 - -
Lja6g1652 492 SMART sant 40 90 IPR001005 -
Lja6g1652 492 SMART sant 93 141 IPR001005 -
Lja6g1652 492 Pfam Myb-like DNA-binding domain 41 88 IPR001005 -
Lja6g1652 492 Pfam Myb-like DNA-binding domain 94 137 IPR001005 -
Lja6g1652 492 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 23 486 - -
Lja6g1652 492 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 88 IPR017930 -
Lja6g1652 492 ProSiteProfiles Myb-like domain profile. 89 139 IPR001005 -
Lja6g1652 492 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1652 Lja-Chr6 43444876 43451439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1652 25 391 MYB Transcription Factor Family AT2G26960 43.733 4.64e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja6g1652 Myb_DNA-binding 5.1e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1652 6 43444876 43451439 Lja6g1652 6 43444876 43451439 PCT