Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1650 ATGGCCACTAAACCGAGTCACGTCGTGGTGATACAGGATGCATCTAAAGAACTAAATTCGAGAGTTTTTGAATGGGCTCTAAATGGATTATCACTTAAGCCAGGAGATACAGTCACCCTAATTGCAATTCTGCATGAGATTTACACTCCAATGGGGTACAAAATCGCTGTTGATGACAGGGCAATGGTTGGAGTGAACCACCGGATCATTAGTGAAGAACTTGAAAGGAAGAAGGAAGAGTATCAGAACCATGAGGAGCTTTCTACGGTTGCTAAGCTATACGAATCCAATGAGGTTACTTTTAAGATAAAGTTGTTTACAGGATCTTCACTGAAAGATGTTGCTTTTAAAGCAGTCATAAACTTAAAGGCAACTTGGTTGATACTTGACAGGCAAATGAAGAAAGATGAGGAGTTCTTCTTGCAAAGGCTTTCTTGTGGCATATCAAGATTAAAGCGTAAAAATCAGATAGTACGCGTAAGAGGACCTTTAAATCAACCAGATGAAATACCATGTAACAGCCATGAAAGAGATTATGAAGATAGTTTGCCAGAAAATCCCTTCAGCATTGATATAGTTCCCAAGGGTTTAATTAAAGTTGATGGGGTGAACCTGGTACAATACATGCTTGATGAGGAAGTGGGGTTTACTACTAACATTAATGAAAACGCATGTCAGACAGGTCCTGATCACCAAAGCATGCATGAAAGGGACATAAACAGTGACCAAATGATAGGTGAAACAGAAGGATATAAACCATGCCAGGATCTTGAACAGGAACAAAACATGTTCCATGATGATGAGGACACAACTTTTGAAATTAACAATTATCGAGCAACTGCTCAAGAAATAGCTAATCAGCCTAGCCAGGAAGGAGATAAGCAATGCCAGAATCGCAATCAGACACAAAACATTCCCCATGATGATGAGAACACCACACTTGTACTTAACAATTATCAAGAAACTGCTCAGGAAATATCTGATCAACCCAGCCAGGAAGTAGAAAAGACACAAATGTTCTTCCAGGATGAGGAGTGGGACTTAAGGCATCCAAAAAAGAGTGAACTTATTTATCAAACGAAAGATGATCAGCTGAGCCAGAATCCAGCAAAACAGACAGAATTTTTTTCCCATGGGGGTATATTGGATGGAGGGCAAGAGAACAGCAATCTGGAAAAATCTATGTGTTCTATATGCTCTGTCTGTAAAAGTAGAAGACCTAATGTTGAATGGCATAAGGAATTCACTTATGAAGAACTCCAAGCAGCCACAGATGGATTCTCATTGAAGAACAGTCTCTCTGAACGTGGATATCTATTTTCCACTTTCAAAGGCCAGCTGGAGGGAGAGCTGAAAATAGTAGTTAAGCAGCATGAAATAACAAACACTCAATTAAGGGAAAAAATCAAGTCGGAAGTCCAAACTATCCTCAAAGCTAGACATAAGAATGTCGTCATGCTATTGGGCTCATTTACAAAAGACCATTTTCTGTTGAGTGTGTATGAGTATGCTTGCAATGGTTCACTTGACAAGTATCTATCAAGGGAAAGCTGTAGGCCATTGACTTGGATTGAGAGGTTGAGAGTTGCAATGGGCCTCGCCAGAGGTCTAAAGTACTTGCATGATAATGACATTATACATGGAAATATAAAACCAAGTAACATTCTTCTAACGCATGATTTCAAACCCCTGCTTGGAGATTTTGGCTTTGGAAAAAAACATGAATTTAAGTCCTATAAGAATAAAAACTTGGGGAATTCTGAATACATAGCCCCCGAGTTTCAGGAGAAGGGGAAATTATCAACTAAGTCAGATGTATACTCGTTTGGGGTGGTTATTTTAGAGTTGATCACTGGACGTAAAGCTACAGATAAAATATCAGGAGTGAAAAGCCTTGTTGGATGGGCAAAGCCTTTTCTTGGAGGAAAGAAGTACTCTGAGTTGTTGGATCCCACAATCAGAAACTCATGTGAAGACGACCAACTTCGTTGGCTGGGAAAAGTAACAGCGCAATGTCTGAAAAAGAGTCCTAAGGAAAGATTATCCATGAATATGGTGGTTTCTGCATTACAAGGCATAGCAGGTAGTGAAGAATGCCACAATACAGAAAACTTCACTTCGGCTTCATCATGTTCAAGATTTGTGCCTGACATGAATGGTTCACAAATTCAGGCTCCTACATCACAAGGCACAGAAGACAGCAGACAGTGCTACATGACAGAAGACTCTACTCAAGCTGTATCACATTCAGGATTTCTGCCTGGCATAAATGGTTCACAAGGTCCAACAGAAGCTGACCAGCCAAGTCAGAATGAGGAGGAGATAGAGAGCAGCTCCTTTTTGGAGGAAGGGAGGTTAAGACTAATAATTGAAAATAGTCACTTTTACATGATAGGCAATAGCAACTCTGATACACTGAACCAGATTGAAGACCAAATGCATATCAGGCCCCAAGGGGTGGAGAGCAGCCGAGAAAAGATGATAAATAACCACATCATGGATGAGGCAGTACCTGATCAGCTGAGTGAGTTTGAAGAACATATGAAGAGCCATGGGGATGGAAAAACACAGAAAATAAGCATTAACCACATGACAGGTCAGACAAAAGTTGACCAGCTGAGCCAGGATCAAGAAGAGGAGATGAGGTCTGTTAAAAAAAAGAGAGAATCAAGACCAGAACCTTTTAGTGGAATGACAGATGAAACAAAAGAAGATCATCTGATCCAGGAGAAAACACAGCTTCAGAGCAGCTACCATGGGAATTTACTGGATGGACATCAAGATGATACCGTTTTGGAGAATTCAAAATCCTCTGCATGCTCTATTTGCAAAAGTAAACGCCCGAAAATTGCACGGATGAAACACTTTCCTTACGAGGAACTCCTAGAAGCAACAGAAGGATTTTCAGTTATGAACTCTCTATCTGAAACTGAAGATGGACCTACTTTCAAAGGCCGGCTAAAGAATAATGTGAAAGTAGTTGTTAAAAAATATCAATTTACCAGGTCCGAGGAAGAGAAGATATTCCAGCCAGAAGTCCAGTTGCTCATCAATGCAAGACATAAAAATGTGATCATGCTGTTGGGGTTATGTACAGATAAAAACCAATTGATGATTGTGTATGAGCAAATTGGAGATTTTGGCTTTGGAAAAGTGAAACTTGAGTCAAAGAAATCCAACCAAGATAAAAATGCACGGGATTCTGGATATACAGCACCTGAGTATCTGGAAAGTGGGAAACCATCAACTAAGACAGATGTGTTCTCCTTTGGAGTGCTTCTTTTAGAGTTGATAACTGGCAGGAGGGCCACGGACAAACTACCAGGAGGCAAAAAACTTATTGGATGGGCAAGGCCCCTTCTGGGAGGAAAGAAGTACCCACAGTTACTGGATCCAAAAATCAGTAACTCCTATGATGAAGAACAACTCCAATGGTTGGTCCAAGTTACAGAAAAATGTCTCAAAAAGAATCCTAAGGAAAGATTTACAATGAATATGGTTGTATCTTCTTTACAAGGCATAGCCGAATCAACAGAGAGCAGTATAATTGAAGATTCATCTCCAGAAAAGTCATCTTTACCATCCGATGAGCCTGACATCACTAATTCACAAGGTCAAATGGAGGATGATCTGGTGAGCTGGGAACAAGAACAGATTGACAGAAACACATACTTGGAAGAGAGAAGCAGATTAGAAACAAAAACTAATCACATGATAGGTCAGAGTGCTGATCAGCTGATACAAGATGCGGAAGAGATGCAGAGAAGGCCTCACAGAGAGGAAATTTCAGGAGAGATGACTATCCGTAATCGAAAGATTGCACATATAAACCCTGATAGCAGCACTGCCTACACAACACAATGTGAGAGTTGTAAGCATACACAAGGAGAAGAAAGAACAAGCAGCAAGTTATGTCAACGAAGGAAAAGGCGCGAATCTTATGGTGGAGCTAAAGACTTTTTTCTTCAAGGGGCTCAAGAGTACACAATGGACCAAGATCGACGTAAACACAAGCATGAAGGTTCCGATCACGGCGGCGAAGACGCCGAGAACGTGAAGCGATCTTCTTCACCTCGGGGTGGTGGTGGTGCAATTCACGTTGATGAGGCTGTTGCTGTTGAGAATCCTTCTCCACCGCCGGCGCTGCGCGAGTGCAACATCTGCGGCAAGACATTCACGAACGGAAAAGCGCTTGGCGGTCACCGGAGATCGCACTTTCAAGCATTGAAGAAGAACATCAACAAGGTGAATAAACCCCCAAATCACTTATCAAAAGTTGTTCATAATAATAGGGCTAGTAGTAATAACAATTGTGGCGGTGTTGGTGGTGTTGTTGATGTTGATAATCGCACATGTTATGTTTGTAAAAAAGAGTTCCCTACGAAGAATGCTTTGTTTGGTCACATGAGATCTCACCCTAGAGATTGGACTGGTCTTCACCCTCCTCCAAGTTCTTCTTCGGCTTCATCTGAGGAAGATTCGGAAGAAGAAGATTGGAGGGTGAATGTTAATGATGTTGCACCACCCTCCATTGATCTTTCAAAGCTCACATCACCAAGTTGGAGAAAGACTGATAGAAGAGGTAGAAAGTGTATTGGTAATTATGAGGCTGCTAGGAATTTGATGTACATTTCAGCTGCTGATTGTTGTGTTGCTCAGTTTTCTTGTAATGATCTTCATGTCACTTCAAAGGCAAAGAGTACTACTACTACTCCTCCTGAATTGTTACTTCCATGTAAGAAAAGGGAGATTGGTGAATCTGCTGAAGGAAATTCAGTGAAGAAGATCAAGTTTGTTCTTAGTGGGTCATTCAATTTGGGGAACAACAAAACTGAGAATGGGGCTGCAGGTGGTGGTGATGAGTCAGTAAAAACTGAGTTTAGTCCGGTTAAGTTGTTGCATGATCATGATGATGGTGGTGATTATTTTGATGAAAGGAAGGTGAGCTTTTTGAGTAAATGTCATGATCAGAAGAATAAGAGCATTGAGTGTTCGAAAGATTCATCAACATCTCATGAAAATGAGGCTCAGAAATATACATGTGACACTTGTGGGAAAACTTTTTCTACTTTTCAAGGCTTAGGGGGACACAGATCCATTCATAAGCTGAAGAATAAGGTAACTGAAGATCAGGAGAATTCTAGCTCTCGTAAAATGGATCATGAGACTCCTCCCGTGGGTGAAGCAACAGTAGCAGATGAAGAACCCGGTCAACCTAGAGGTCCAAAAGGACTTGACATTGATCTCAATGAGCCATATTTTGATGATTAA 5271 0.41 MATKPSHVVVIQDASKELNSRVFEWALNGLSLKPGDTVTLIAILHEIYTPMGYKIAVDDRAMVGVNHRIISEELERKKEEYQNHEELSTVAKLYESNEVTFKIKLFTGSSLKDVAFKAVINLKATWLILDRQMKKDEEFFLQRLSCGISRLKRKNQIVRVRGPLNQPDEIPCNSHERDYEDSLPENPFSIDIVPKGLIKVDGVNLVQYMLDEEVGFTTNINENACQTGPDHQSMHERDINSDQMIGETEGYKPCQDLEQEQNMFHDDEDTTFEINNYRATAQEIANQPSQEGDKQCQNRNQTQNIPHDDENTTLVLNNYQETAQEISDQPSQEVEKTQMFFQDEEWDLRHPKKSELIYQTKDDQLSQNPAKQTEFFSHGGILDGGQENSNLEKSMCSICSVCKSRRPNVEWHKEFTYEELQAATDGFSLKNSLSERGYLFSTFKGQLEGELKIVVKQHEITNTQLREKIKSEVQTILKARHKNVVMLLGSFTKDHFLLSVYEYACNGSLDKYLSRESCRPLTWIERLRVAMGLARGLKYLHDNDIIHGNIKPSNILLTHDFKPLLGDFGFGKKHEFKSYKNKNLGNSEYIAPEFQEKGKLSTKSDVYSFGVVILELITGRKATDKISGVKSLVGWAKPFLGGKKYSELLDPTIRNSCEDDQLRWLGKVTAQCLKKSPKERLSMNMVVSALQGIAGSEECHNTENFTSASSCSRFVPDMNGSQIQAPTSQGTEDSRQCYMTEDSTQAVSHSGFLPGINGSQGPTEADQPSQNEEEIESSSFLEEGRLRLIIENSHFYMIGNSNSDTLNQIEDQMHIRPQGVESSREKMINNHIMDEAVPDQLSEFEEHMKSHGDGKTQKISINHMTGQTKVDQLSQDQEEEMRSVKKKRESRPEPFSGMTDETKEDHLIQEKTQLQSSYHGNLLDGHQDDTVLENSKSSACSICKSKRPKIARMKHFPYEELLEATEGFSVMNSLSETEDGPTFKGRLKNNVKVVVKKYQFTRSEEEKIFQPEVQLLINARHKNVIMLLGLCTDKNQLMIVYEQIGDFGFGKVKLESKKSNQDKNARDSGYTAPEYLESGKPSTKTDVFSFGVLLLELITGRRATDKLPGGKKLIGWARPLLGGKKYPQLLDPKISNSYDEEQLQWLVQVTEKCLKKNPKERFTMNMVVSSLQGIAESTESSIIEDSSPEKSSLPSDEPDITNSQGQMEDDLVSWEQEQIDRNTYLEERSRLETKTNHMIGQSADQLIQDAEEMQRRPHREEISGEMTIRNRKIAHINPDSSTAYTTQCESCKHTQGEERTSSKLCQRRKRRESYGGAKDFFLQGAQEYTMDQDRRKHKHEGSDHGGEDAENVKRSSSPRGGGGAIHVDEAVAVENPSPPPALRECNICGKTFTNGKALGGHRRSHFQALKKNINKVNKPPNHLSKVVHNNRASSNNNCGGVGGVVDVDNRTCYVCKKEFPTKNALFGHMRSHPRDWTGLHPPPSSSSASSEEDSEEEDWRVNVNDVAPPSIDLSKLTSPSWRKTDRRGRKCIGNYEAARNLMYISAADCCVAQFSCNDLHVTSKAKSTTTTPPELLLPCKKREIGESAEGNSVKKIKFVLSGSFNLGNNKTENGAAGGGDESVKTEFSPVKLLHDHDDGGDYFDERKVSFLSKCHDQKNKSIECSKDSSTSHENEAQKYTCDTCGKTFSTFQGLGGHRSIHKLKNKVTEDQENSSSRKMDHETPPVGEATVADEEPGQPRGPKGLDIDLNEPYFDD* 1757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1650 1756 ProSitePatterns Zinc finger C2H2 type domain signature. 1452 1472 IPR013087 -
Lja6g1650 1756 Gene3D Phosphorylase Kinase; domain 1 939 1043 - -
Lja6g1650 1756 MobiDBLite consensus disorder prediction 1702 1728 - -
Lja6g1650 1756 PANTHER OS01G0253100 PROTEIN 1044 1266 IPR045271 GO:0004714|GO:0006468
Lja6g1650 1756 PANTHER OS01G0253100 PROTEIN 723 1044 IPR045271 GO:0004714|GO:0006468
Lja6g1650 1756 PANTHER OS01G0253100 PROTEIN 84 207 IPR045271 GO:0004714|GO:0006468
Lja6g1650 1756 PANTHER OS01G0253100 PROTEIN 356 711 IPR045271 GO:0004714|GO:0006468
Lja6g1650 1756 Pfam Protein tyrosine and serine/threonine kinase 973 1042 IPR001245 GO:0004672|GO:0006468
Lja6g1650 1756 Pfam Protein tyrosine and serine/threonine kinase 448 690 IPR001245 GO:0004672|GO:0006468
Lja6g1650 1756 MobiDBLite consensus disorder prediction 286 309 - -
Lja6g1650 1756 ProSiteProfiles Protein kinase domain profile. 845 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1650 1756 MobiDBLite consensus disorder prediction 742 775 - -
Lja6g1650 1756 MobiDBLite consensus disorder prediction 873 906 - -
Lja6g1650 1756 MobiDBLite consensus disorder prediction 1329 1354 - -
Lja6g1650 1756 Pfam Protein kinase domain 1044 1169 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1650 1756 Gene3D Classic Zinc Finger 1383 1472 - -
Lja6g1650 1756 MobiDBLite consensus disorder prediction 1328 1364 - -
Lja6g1650 1756 Pfam C2H2-type zinc finger 1679 1701 - -
Lja6g1650 1756 Pfam C2H2-type zinc finger 1452 1473 - -
Lja6g1650 1756 Pfam C2H2-type zinc finger 1384 1405 - -
Lja6g1650 1756 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 723 1044 - -
Lja6g1650 1756 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 84 207 - -
Lja6g1650 1756 SUPERFAMILY beta-beta-alpha zinc fingers 1451 1701 IPR036236 -
Lja6g1650 1756 Gene3D Transferase(Phosphotransferase) domain 1 505 713 - -
Lja6g1650 1756 MobiDBLite consensus disorder prediction 1292 1309 - -
Lja6g1650 1756 MobiDBLite consensus disorder prediction 1702 1756 - -
Lja6g1650 1756 ProSiteProfiles Zinc finger C2H2 type domain profile. 1679 1706 IPR013087 -
Lja6g1650 1756 ProSiteProfiles Zinc finger C2H2 type domain profile. 1450 1477 IPR013087 -
Lja6g1650 1756 Gene3D Phosphorylase Kinase; domain 1 402 503 - -
Lja6g1650 1756 SUPERFAMILY Protein kinase-like (PK-like) 952 1176 IPR011009 -
Lja6g1650 1756 MobiDBLite consensus disorder prediction 1474 1504 - -
Lja6g1650 1756 Coils Coil 67 87 - -
Lja6g1650 1756 MobiDBLite consensus disorder prediction 1290 1309 - -
Lja6g1650 1756 Gene3D Transferase(Phosphotransferase) domain 1 1044 1207 - -
Lja6g1650 1756 MobiDBLite consensus disorder prediction 867 906 - -
Lja6g1650 1756 SMART c2h2final6 1450 1472 IPR013087 -
Lja6g1650 1756 SMART c2h2final6 1679 1701 IPR013087 -
Lja6g1650 1756 SMART c2h2final6 1383 1405 IPR013087 -
Lja6g1650 1756 MobiDBLite consensus disorder prediction 1058 1080 - -
Lja6g1650 1756 ProSitePatterns Zinc finger C2H2 type domain signature. 1681 1701 IPR013087 -
Lja6g1650 1756 MobiDBLite consensus disorder prediction 1178 1206 - -
Lja6g1650 1756 ProSiteProfiles Zinc finger C2H2 type domain profile. 1383 1405 IPR013087 -
Lja6g1650 1756 ProSitePatterns Zinc finger C2H2 type domain signature. 1385 1405 IPR013087 -
Lja6g1650 1756 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 1044 1266 - -
Lja6g1650 1756 PANTHER DUAL-SPECIFICITY KINASE DOMAIN PROTEIN 356 711 - -
Lja6g1650 1756 SUPERFAMILY Protein kinase-like (PK-like) 410 696 IPR011009 -
Lja6g1650 1756 ProSiteProfiles Protein kinase domain profile. 417 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1650 1756 MobiDBLite consensus disorder prediction 742 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1650 Lja-Chr6 43365844 43384017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1650 415 690 Trihelix Transcription Factor Family AT5G38560 39.100 3.77e-51 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Lja6g1650 PK_Tyr_Ser-Thr 3.1e-38 CL0016
TF C2H2 Lja6g1650 PK_Tyr_Ser-Thr 3.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1650 - - gsj:114401847 1098.57