Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1649 ATGGCCGTGACCTTCTCAAATCTCCACACCGATTCAGGCCTCGAATCCCTCGACGGCCACCTCTCCGGCAAGACCTACGTTTCTGGGGATCAGTTCACCAAGGATGACATCAAAGTGTTTGGTTTTGTTTTGGAGAAGCCAGGTGACAATTTCCCCAATGCGGCCAAGTGGTACGATGCTGTCTCTTCTCACCTTGCTGCCAGCTTCCCTGGCAATGCTCAAGGAGTAAGATTCAGTGGCAAAGCTGCTGCTAAACTGGATGCTTCTGCTGAAGATGATTTGAATAAGGATTTTCAAAAGGTTTCTTTGGACACTGCTGAAGATGATGATGACCTTGATCTTTTTGGCGATGAGACAGAGGAGGACAAAAAGGCAGCGGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAGAAAGAGAGTGGGAAATCTTCTGTGTTGCTCGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTGTTGAGATGCCTGGTCTATTTTGGGGAGCATCCAAACTGGTTGCTGTTGGTTATGGCATCAAGAAGTTGCAGATCATGTTGACCATTGTTGATGACCTTGTATCTGTGGACACCCTCATCGAGGAGTGTCTGACTGCCGAGCCTCGTGACGAGTTTATCCAGAGCTGTGACATTGTTGCATTTAACAAAATCTAA 699 0.4778 MAVTFSNLHTDSGLESLDGHLSGKTYVSGDQFTKDDIKVFGFVLEKPGDNFPNAAKWYDAVSSHLAASFPGNAQGVRFSGKAAAKLDASAEDDLNKDFQKVSLDTAEDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVAVGYGIKKLQIMLTIVDDLVSVDTLIEECLTAEPRDEFIQSCDIVAFNKI* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1649 232 Gene3D - 6 69 - -
Lja6g1649 232 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 232 - -
Lja6g1649 232 PANTHER ELONGATION FACTOR 1-BETA 2 1 232 - -
Lja6g1649 232 Pfam EF-1 guanine nucleotide exchange domain 145 232 IPR014038 GO:0003746|GO:0006414
Lja6g1649 232 SUPERFAMILY eEF-1beta-like 140 232 IPR036219 -
Lja6g1649 232 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 221 232 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lja6g1649 232 CDD EF1B 141 232 IPR014038 GO:0003746|GO:0006414
Lja6g1649 232 MobiDBLite consensus disorder prediction 120 140 - -
Lja6g1649 232 SUPERFAMILY GST C-terminal domain-like 11 64 IPR036282 -
Lja6g1649 232 SMART EF1_GNE_2 143 232 IPR014038 GO:0003746|GO:0006414
Lja6g1649 232 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 108 116 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lja6g1649 232 Gene3D - 136 232 IPR014717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1649 Lja-Chr6 43357810 43360773 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1649 1 232 Eukaryotic Initiation Factors Gene Family AT5G12110 68.670 2.32e-102 294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1649 6 43357810 43360773 Lja6g1649 6 43357810 43360773 PCT