Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1648 ATGTCAAGTGTAGCAACATATTGGTGTTACACATGCAGGCAGCCAATCTTGTTAGCAGGGAGAGATGTCACTTGCCCTTATTGTGATGGAAGCTTTGTGCAAGAACTTAATGAGAGGCAAGGCATTGCACCCCAACATGGCTTTTCATCATTAGATCCTCAAGCGCCTGACATATTCGATGCTATTCACTCTGTTATAGGTCAAAGAGGTTCTGCACCTAGAATTGGGCTTAGAGATGCTGTTGACAGTTATATGAGGCGGAGAATGGCTGGTAATAGAGACCCAAACTTTGATATTAGAAGGGGGTCTGGTTCTGGCCTAGTTCCTGAACAGACTTGGGGTGTTTTTAGTTCTGGTTCTTATCTGATAGTTCATGATCAAGGTCCTGGGTTCTCCTTGCCTACTGGTAGCTCAAGAGGTGTTCCTAGACGCGTCGAATTCGGTATGGGTCCTGGACTAGAACAACTTATTGAACAACTCAATGTCAATGATCGGCTTGGTCCGGCTCCTGCATCGCGCTCTTCGATTGATGCAATGCCGACTATTAAGATCGCGCAGGCACATCTTCGCTCTGATTCGCACTGTCCGGTTTGTCAAGAAAGATTCGAGCTGGGCTCTAAGGCCAGGGAGATGCCGTGTAACCATATTTATCACTCGGACTGTATTGTTCCTTGGTTAGTTCAGCATAACTCGTGTCCTGTTTGCCGAATTGAGCTGCCACCTGAAGGACGCAGTCGTTCTCGGGGTGGTCGAAATTGGGGACGAAGAAGGAATGCCAATAGCAATGAGAATAGCCAGCTGAACCATAGAAGGAGAAATCCACTATCGTTTTTGTGGCCATTTCGTTCTTCCAGTTCAAATGCTAATTAA 870 0.4644 MSSVATYWCYTCRQPILLAGRDVTCPYCDGSFVQELNERQGIAPQHGFSSLDPQAPDIFDAIHSVIGQRGSAPRIGLRDAVDSYMRRRMAGNRDPNFDIRRGSGSGLVPEQTWGVFSSGSYLIVHDQGPGFSLPTGSSRGVPRRVEFGMGPGLEQLIEQLNVNDRLGPAPASRSSIDAMPTIKIAQAHLRSDSHCPVCQERFELGSKAREMPCNHIYHSDCIVPWLVQHNSCPVCRIELPPEGRSRSRGGRNWGRRRNANSNENSQLNHRRRNPLSFLWPFRSSSSNAN* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1648 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 242 IPR013083 -
Lja6g1648 289 MobiDBLite consensus disorder prediction 243 269 - -
Lja6g1648 289 CDD RING-H2_RNF126_like 195 236 - -
Lja6g1648 289 ProSiteProfiles Zinc finger RING-type profile. 195 236 IPR001841 -
Lja6g1648 289 Pfam Ring finger domain 194 236 IPR001841 -
Lja6g1648 289 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Lja6g1648 289 PANTHER OS03G0351800 PROTEIN 2 288 - -
Lja6g1648 289 SUPERFAMILY RING/U-box 175 242 - -
Lja6g1648 289 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 288 - -
Lja6g1648 289 SMART ring_2 195 235 IPR001841 -
Lja6g1648 289 MobiDBLite consensus disorder prediction 254 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1648 Lja-Chr6 43354062 43355960 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1648 152 252 C3H Transcription Factor Family AT5G01980 42.718 1.76e-23 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1648 K11982 - gmx:100813674 418.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1648 6 43354062 43355960 Lja6g1648 6 43354062 43355960 PCT