Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1646 ATGGAAGTAGAACTTTATATGAGGGAACTCTTACGCAATGATCTGCATGGTAATTGGTCTCCGGCGTCACGGCGTTGTCGGTTAATGGATACAATGCCTGCTATGAAGATCACAGAGGAGCATCTTTGCTCTGATTTGTACTGTCCAGTTTGTCAAGAAAGATTTGAGCTGAGTTCCAAGGCCACGGAGATGCCATGCAAGCATATTTTCCACTTGGACTGTATTGTTCCTTGGTTAGTTGAGCAAAACTCATGTCCGGTTTGCCGAACTAAATTGCCACCACCGGAGAGAGTACGTGCTACACCTTCTCAAAACTGCCTTCCGCCTGAAGGAAGTTGTGCTACTCCTTCTCGTGGTAGTCCAAATCAGCCGCCGGTTGAACTTCCACGAGAAGGAGGTGTTAGTTCTCATGGTAGCAAAACCGTTGACCAAAATACATTGCCAATCTTCTGGTGTCTTTTATTCGTCTTTGTTTTGTGGATTTTAGGTATGACACAGGGGAAGCATGAAATTGGGGAGTGA 522 0.4559 MEVELYMRELLRNDLHGNWSPASRRCRLMDTMPAMKITEEHLCSDLYCPVCQERFELSSKATEMPCKHIFHLDCIVPWLVEQNSCPVCRTKLPPPERVRATPSQNCLPPEGSCATPSRGSPNQPPVELPREGGVSSHGSKTVDQNTLPIFWCLLFVFVLWILGMTQGKHEIGE* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1646 173 MobiDBLite consensus disorder prediction 96 139 - -
Lja6g1646 173 Pfam Ring finger domain 47 89 IPR001841 -
Lja6g1646 173 ProSiteProfiles Zinc finger RING-type profile. 48 89 IPR001841 -
Lja6g1646 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 105 IPR013083 -
Lja6g1646 173 PANTHER OS03G0351800 PROTEIN 9 117 - -
Lja6g1646 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 117 - -
Lja6g1646 173 SUPERFAMILY RING/U-box 28 100 - -
Lja6g1646 173 SMART ring_2 48 88 IPR001841 -
Lja6g1646 173 MobiDBLite consensus disorder prediction 105 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1646 Lja-Chr6 43349767 43350288 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1646 21 107 C3H Transcription Factor Family AT5G01980 41.379 1.51e-18 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1646 K11982 - nnu:104593638 118.242