Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1641 ATGTCCACCACCATCAAAGCTTCTTACACTGTCATCCCCGCCGAGGCCAGTCCAAACACCCCCCTATGGTTGTCCCCCAGCGACCAAGTGGCGCGTTGGAGCCACACCTCCACCATCTACGTTTACAAAGAAACCCCAAACCACCACGCCATTGACACAATGCGAGACTCTCTCAGCAAGATCCTCGTCCATTACTACCCCCTCGCCGGACGACTCAGCTGGATCGAAGGCCACCGTCTTCAACTCAATTGCAACGGCAAAGGTGTCGTACTTATCGAAGCCGAATCAACAAAAACACTCTCTTCATACGGAGACTTTGCACCTAGTGACACCGTGAAAATGGACCTCACTCCTACCGTTGATTATACCCAACCCATAGAGGATCTCCCTCTACTTCTAGTGCAGTTGACAAGATTCAAAGGAACCAAACAAGGCCTTGTCATTGGAATGGCCTTTAACCACGTTCTAGGCGACGGCCTCGCCGCAATTCGTTTCATCAACTCATGGGCCAAGCTCTGTAAGGGGGACGTCGCGCTGGATCACAGCGAGATGTTCCCCTTTCTTGACCGGACGGTGCTGAACTCCTCCACGCGCCCGTGCTTCGACCACCCCGAGTTGAAGCCTCTCCCGCTCTTGCTTGGCAGTACTAACACCGTGGCCGAACAGAAACACGAGAAGACGGCCGTGGTGTTGAAACTGACAAATGAGCAAGTGCAGAAATTGAAGCAAAAAGCTAATAATGGTCTTGAGGAGTCGTCTGCACGACCTTACAGCACGTATGAGGTTGTTTCCGCGCACGTGTGGAAGTGCGCGACAAAGGCACGTGGGCTGGACGATGTTCAACCCACGGTGGTTAGGGTGAGTGCAGATATTCGTAGCCGGCTGAACCCGCCTCTCCCTAGAAACTACTTTGGGAACGCGCTGGCCGTGGCGCTAACCCCAACTTGTTTCGCGAGGGATGTTTTGTTGAACCCGTTGAGGTACGGGGCGAGAAAGATAAGGGAGGCAGTGGAGTTGCTTAAGGACGATTATGTGAGGTCGCAGTTGGACTTCATTAGGTGTCAAGAGCGGTTGGATTCGATTCGGGCTTCGTATTTGGACCGTGGGGAGGCTAAAAATGCGCCATTTTATGGGAACCCGAACCTCACGATTGTGAGCTGGATGAGTATGCCGGTGTATGAAGCGGATTTTGGGTGGGGGAAGCCTGTGCGTTTCGGTCCGGGAGCTGTGTATCCTGATGGGAAGGCGTATATTATCCGAAGCTCAGATGGAGATGGGTCACTTGATGTATCTGTGCATTTGCAGATGAGGCACATGGAGCTTTTCATGAAGTTCTTTTACCAGGATATATGA 1353 0.5248 MSTTIKASYTVIPAEASPNTPLWLSPSDQVARWSHTSTIYVYKETPNHHAIDTMRDSLSKILVHYYPLAGRLSWIEGHRLQLNCNGKGVVLIEAESTKTLSSYGDFAPSDTVKMDLTPTVDYTQPIEDLPLLLVQLTRFKGTKQGLVIGMAFNHVLGDGLAAIRFINSWAKLCKGDVALDHSEMFPFLDRTVLNSSTRPCFDHPELKPLPLLLGSTNTVAEQKHEKTAVVLKLTNEQVQKLKQKANNGLEESSARPYSTYEVVSAHVWKCATKARGLDDVQPTVVRVSADIRSRLNPPLPRNYFGNALAVALTPTCFARDVLLNPLRYGARKIREAVELLKDDYVRSQLDFIRCQERLDSIRASYLDRGEAKNAPFYGNPNLTIVSWMSMPVYEADFGWGKPVRFGPGAVYPDGKAYIIRSSDGDGSLDVSVHLQMRHMELFMKFFYQDI* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1641 450 Gene3D - 1 208 IPR023213 -
Lja6g1641 450 Gene3D - 214 448 IPR023213 -
Lja6g1641 450 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 5 450 - -
Lja6g1641 450 PANTHER SHIKIMATE/QUINATE HYDROXYCINNAMOYLTRANSFERASE 5 450 - -
Lja6g1641 450 Coils Coil 231 251 - -
Lja6g1641 450 Pfam Transferase family 2 447 - -
Lja6g1641 450 SUPERFAMILY CoA-dependent acyltransferases 20 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1641 Lja-Chr6 43262391 43264012 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1641 1 448 Monolignol Biosynthesis Gene Families AT5G48930 37.168 3.08e-99 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1641 K13065 - gmx:100787038 659.833