Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1623 ATGGCTTTCACAGCATTAGACATGTGTGAGGAGAATATGGTTTTCAGTTTGGAGTCTCAGAAGTCAGTGCCTGCACCTTTCCTGACAAAGACATACCAGCTTGTTGATGACCCTCTCACTGACCACATTGTGTCTTGGGGTGAAGATCACATCACATTTGTTGTGTGGAGGCCCCCTGAGTTTGCTAGAGATCTTCTTCCCAACTATTTCAAACATAACAACTTCTCAAGCTTTGTTAGGCAACTCAACACCTATGGTTTCAAGAAGTTAGTTGCAGATAGGTGGGAGTTTGCAAATGAGTTCTTCAGAAAAGGAGCTAGGCACCTGTTATGTGAAATCCACAGGAGAAGAACACATAATCATCAGCACCATCACCAACTCCACCTTGATCAACCACCACAGATTCTTCAGCAAGATCATGAAAGTCTCTGTTGGCCTGACCCTCCATTATTACCATCTCCTAAATTAAGCACAGATATTTTAACAGAACTTTCTGAGGACAACCAGAGACTAAGAAAAAAGAACTTTATGCTCTTATCAGAACTCAGTCAAATGAAGAATCTGTACAATGACATTATATATTTCATCCAAAACCATTTAAAACCAACAACACCCTTTGACCAAAGAAGCAGTAGTGCTTTCCCAAGGCTGGTGGATTTGGATATGTTGCCTGATTCTCGAACAGATGTGGGACTAAGAAATATGAAAAGCTGTATCATAAAGAAGTCTTTGATAAGTTGTAATGAGGAATCAAACAGTTCTGTGAAGCTCTTTGGGGTTCCATTAATTGGAAAAAAAAAGATTGCACTCAGATAA 816 0.3995 MAFTALDMCEENMVFSLESQKSVPAPFLTKTYQLVDDPLTDHIVSWGEDHITFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKLVADRWEFANEFFRKGARHLLCEIHRRRTHNHQHHHQLHLDQPPQILQQDHESLCWPDPPLLPSPKLSTDILTELSEDNQRLRKKNFMLLSELSQMKNLYNDIIYFIQNHLKPTTPFDQRSSSAFPRLVDLDMLPDSRTDVGLRNMKSCIIKKSLISCNEESNSSVKLFGVPLIGKKKIALR* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1623 271 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 268 IPR027725 -
Lja6g1623 271 PRINTS Heat shock factor (HSF) domain signature 78 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja6g1623 271 PRINTS Heat shock factor (HSF) domain signature 27 50 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja6g1623 271 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja6g1623 271 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-4D 14 268 - -
Lja6g1623 271 SMART hsfneu3 23 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja6g1623 271 ProSitePatterns HSF-type DNA-binding domain signature. 66 90 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja6g1623 271 Pfam HSF-type DNA-binding 27 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja6g1623 271 Gene3D - 19 118 IPR036388 -
Lja6g1623 271 SUPERFAMILY "Winged helix" DNA-binding domain 24 116 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1623 Lja-Chr6 43085932 43087268 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1623 11 210 HSF AT1G46264 57.778 2.42e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja6g1623 HSF_DNA-bind 8.9e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1623 6 43085932 43087268 Lja6g1623 6 43085932 43087268 ECH
Lja6g1623 6 43085932 43087268 Lja6g1623 6 43085932 43087268 PCT