Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1619 ATGGGCAACTGTTGCTCCCAAGCCAACGCCGGCGACGCTCCCGAAGCAATGCCAGCCGGCGCCGACAAGGGAGAAACCAACCAAAAAAGCAGCAACAACCATGCAGGAGGAGACAACCCTGCCACCACCACCGACCCTACCACCCCACCACCAACAACATCCAAGCCGTCACCCTCACCCTTGCCTACTCCTCCTTCCTCAAAACCCACCAAGGCCGCCCCCGTCGGTCCGGTCCTGGGGCGGCCGATGGAGGACGTCAGGGCGACATATAGCATGGGGAAGGAGCTAGGGAGGGGGCAGTTTGGCGTGACTCACCTTTGCACCCACAAGACCACTGGACACCAATTTGCATGCAAAACCATTGCCAAGAGGAAGCTGGTGAACAAGGAGGACATAGAGGATGTGAGAAGGGAGGTGCAAATCATGCACCATCTTACAGGTCAACCTAACATTGTGGAGTTGAAGGGTGCCTATGAGGATAAGCAATCGGTGCATTTGGTGATGGAGCTTTGTGCTGGTGGTGAACTCTTTGATCGTATCATTGCTAAGGGACATTACACAGAACGCGCTGCGGCTTCTTTGTTGAGAACGATTGTGCAGATTGTTCATACGTTTCATTCCATGGGGGTTATTCATAGAGACCTTAAGCCTGAGAATTTCCTCTTGTTGAATAAGGATGAGAAGTCACCCCTCAAGGCCACTGATTTTGGTCTTTCAGTTTTTTACAAGCAAGGGGACACATTCAAAGACATTGTTGGAAGTGCATATTACATTGCACCTGAGGTCTTGAAGAGGAGATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTCTATCTGGTGTCCCTCCATTTTGGGCAGAATCAGAACATGGTATATTCAATGCCATCTTAAAAGGCCACGTTGACTTCACAAGCGACCCATGGCCTTCAATTTCACCTGCAGCAAAAGATCTTGTAAGGAAAATGTTAAATTCAGATCCCAAACAGAGACTCACAGCACAAGAAGTTCTCAATCATCCTTGGATCATGGAGGATGGAGAAGCACCAGATAAACCTCTTGACAATGCTGTGCTCAATAGGCTCAAACAGTTCAGAGCAATGAACCAATTCAAGAAAGTTGCACTAAGGGTCATTGCTGGCTGTTTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTTAGAGGGATGGACACTGACAACAGTGGAACCATTACAATTGAAGAGCTAAAGCAGGGGCTTGCAAAACAGGGGACCAAGCTAACAGAGCAAGAAGTTAAGCAGTTAATGGAAGCTGCTGATGCTGATGGCAATGGAACCATAGATTACGACGAGTTCATCACAGCAACAATGCACATGAACAGAATGAACAGAGAAGAACATCTTTACACTGCCTTCCAATACTTTGATAAAGATAACAGCGGGTTCATTACTACTGAAGAACTAGATCAAGCTCTCCATGAATATAACATGCATGATGGTAGGGACATCAAGGAAATCCTTCATGAAGTTGATGGAGATAATGATGGTCGCATTAACTATGATGAGTTTGCGGCGATGATGAGAAAAGGAAATCCAGAAGCTCTTACTAAGAAGAGGCGTGATTCGTTTGTTTCACATTAG 1641 0.4668 MGNCCSQANAGDAPEAMPAGADKGETNQKSSNNHAGGDNPATTTDPTTPPPTTSKPSPSPLPTPPSSKPTKAAPVGPVLGRPMEDVRATYSMGKELGRGQFGVTHLCTHKTTGHQFACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLNKDEKSPLKATDFGLSVFYKQGDTFKDIVGSAYYIAPEVLKRRYGPEVDIWSVGVMLYILLSGVPPFWAESEHGIFNAILKGHVDFTSDPWPSISPAAKDLVRKMLNSDPKQRLTAQEVLNHPWIMEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFRGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGFITTEELDQALHEYNMHDGRDIKEILHEVDGDNDGRINYDEFAAMMRKGNPEALTKKRRDSFVSH* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1619 546 Gene3D Transferase(Phosphotransferase) domain 1 176 355 - -
Lja6g1619 546 CDD STKc_CAMK 90 347 - -
Lja6g1619 546 Gene3D - 356 531 - -
Lja6g1619 546 ProSitePatterns EF-hand calcium-binding domain. 404 416 IPR018247 -
Lja6g1619 546 ProSiteProfiles EF-hand calcium-binding domain profile. 463 498 IPR002048 GO:0005509
Lja6g1619 546 PANTHER SERINE/THREONINE-PROTEIN KINASE 36 536 - -
Lja6g1619 546 ProSiteProfiles EF-hand calcium-binding domain profile. 502 533 IPR002048 GO:0005509
Lja6g1619 546 SUPERFAMILY EF-hand 388 528 IPR011992 -
Lja6g1619 546 ProSitePatterns EF-hand calcium-binding domain. 511 523 IPR018247 -
Lja6g1619 546 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 36 536 - -
Lja6g1619 546 SUPERFAMILY Protein kinase-like (PK-like) 75 376 IPR011009 -
Lja6g1619 546 ProSitePatterns Protein kinases ATP-binding region signature. 96 123 IPR017441 GO:0005524
Lja6g1619 546 ProSitePatterns EF-hand calcium-binding domain. 476 488 IPR018247 -
Lja6g1619 546 ProSiteProfiles Protein kinase domain profile. 90 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1619 546 MobiDBLite consensus disorder prediction 24 43 - -
Lja6g1619 546 Gene3D Phosphorylase Kinase; domain 1 92 175 - -
Lja6g1619 546 SMART efh_1 395 423 IPR002048 GO:0005509
Lja6g1619 546 SMART efh_1 431 459 IPR002048 GO:0005509
Lja6g1619 546 SMART efh_1 502 530 IPR002048 GO:0005509
Lja6g1619 546 SMART efh_1 467 495 IPR002048 GO:0005509
Lja6g1619 546 MobiDBLite consensus disorder prediction 1 81 - -
Lja6g1619 546 ProSiteProfiles EF-hand calcium-binding domain profile. 427 462 IPR002048 GO:0005509
Lja6g1619 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Lja6g1619 546 ProSitePatterns EF-hand calcium-binding domain. 440 452 IPR018247 -
Lja6g1619 546 Pfam EF-hand domain pair 465 528 IPR002048 GO:0005509
Lja6g1619 546 Pfam EF-hand domain pair 396 456 IPR002048 GO:0005509
Lja6g1619 546 SMART serkin_6 90 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1619 546 ProSiteProfiles EF-hand calcium-binding domain profile. 391 426 IPR002048 GO:0005509
Lja6g1619 546 MobiDBLite consensus disorder prediction 44 71 - -
Lja6g1619 546 Pfam Protein kinase domain 90 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1619 Lja-Chr6 43058840 43062065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1619 1 541 EF-hand Containing Proteins AT5G12180 79.342 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja6g1619 Pkinase 2.9e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1619 K13412 - gmx:100781355 952.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1619 6 43058840 43062065 Lja6g1619 6 43058840 43062065 ECH
Lja6g1619 6 43058840 43062065 Lja6g1619 6 43058840 43062065 PCT