Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1610 ATGGAAGCTTGCTTGAAACCTTCCATTAATGAAGATGACTCTGTAATACTCTTTTCCACTTCTAACTCTCCTGAAGAGTCCACTAGTCCTTCTTCTTCTTTCTACCATTCACCACCACCTGCACTGCATCATTTCAAAACAGCACACAAACTTTATGTCAGAAACCTCTCCTACACTTTGCACCCACAAAAGAACACTCCCTTTTCGTTCTGTCACCTGACTCAAAAACCCAAGCCTGTAAACATACTCAAGTCTGTGTCTTTTGTGGCCAGAAGTTCTGAGATTGTTGCTGTTGTTGGTCCTAGTGGCACAGGGAAGTCTACTCTTCTTCGAATCATTGCCGGGCGGGTGAAAGACAGAGATTTTGATCCTAAAACTATCTCAATCAATGATCATCCAATGACCAGTCCTGCCCAGTTGAGGAAGATATGTGGCTTTGTGGCCCAGGAAGACAATTTGCTTCCTCTGCTAACTGTGAAGGAAACTTTGCTGTTCAGTGCCAAGTTTAGGCTAAAAGAAATGACACCAAATGATAGAGAAATGAGGGTGGAAAGCTTGATGCAAGAGCTAGGCCTTTTTCATGTTTCAGATAGTTTTGTTGGGGATGAAGAGAATAGAGGGATATCTGGTGGGGAGAGAAAGAGGGTATCAATTGGAGTTGACATGATTCATAATCCTCCAATTTTGCTTCTAGATGAACCAACATCAGGCCTAGACAGCACTTCAGCTCTGCATGTGATAGAGCTTCTGTCTTCAATGGTCAAACAAAGGCAAAGGACAGTGGTCCTATCAATCCACCAACCTAGCTATAGAATTTTGCAGTACATTTCTAAGTTCTTGATCCTCTCTCATGGTTCAGTTGTTCACAATGGTAGCCTAGAATCACTAGAGGAAACCATAACTAAATTGGGGTTTCAAATTCCTATACAACTGAATGCTTTAGAATTTTCCATGGAAATTATCCGCAGGTTAGAAGATTCCACTTCCAAATTTGACACTTACACCATTGAGGAAAATGAGCTTTTTCCAAACCCTTTATGGCCAGAGGAAGAAAACAGTAGAGTCCAATATTATACAGAAAGTTTTGGCAAACATTGCTATGCATACTTGATGGAGACACTATTTCTCTGCTCAAGATTTTGGAAGATCATTTACAGAACAAAACAGCTTTTCCTGGCCAGAACATTGCAAGCACTAGTTGGTGGATTTGGGCTAGCAAGTGTTTACATAAAGGTTAGAAAAGATGAAGAAGGAATTGCAGAAAGGTTAGGCTTGTTTGCATTTAGTCTCAGTTTTCTCCTGTCTTCTACAGTGGAAGCACTTCCAATATACCTTCAAGAGAGAAGTGTTTTGATGAAAGAAGCCTCAAGGGGAGCCTATAGAATTTCCTCTTACATGATAGCCAACACTCTTGTTTTTCTCCCTTTCTTGTTTGTAGTGTCTATACTTTTTGCAGTTCCTGTGTATTGGATTGTAGGACTCAATCCTTCCCTTTCAGCCTTCACCTTCTTCACTTTTGTGGTTTGGCTCATTGTGCTCATGGCAAGTTCTCTAGTACTCTTTTTGAGTGCAGTCTCTCCTGATTTCATTTCAGGGAATTCTCTCATCTGCACTGTTCTTGGAGCCTTCTTCCTCTTCTCTGGATACTTCATCCCAAAAGAGAGCATTCCAAAATATTGGCTATTCATGTATTATGTGTCCCTCTATAGGTACCCTTTGGATGCACTACTCACAAATGAGTATTGGAATGTTAGAACTGAGTGTTTCTCTGAACAAACAGAGAATGCTCATTGTTTGATTACCGGCTTTGATGTGTTGAAGAGTAGAGGGCTTGAAAAAGATCATAGGTGGATGAATGTAGGGATCATGCTTGGATTTTTTGTGTTCTATCGTGTGCTTTGTTGGATTATACTTGCTAGAAAAGCCTCCAAGACAACAATATAA 1944 0.4059 MEACLKPSINEDDSVILFSTSNSPEESTSPSSSFYHSPPPALHHFKTAHKLYVRNLSYTLHPQKNTPFSFCHLTQKPKPVNILKSVSFVARSSEIVAVVGPSGTGKSTLLRIIAGRVKDRDFDPKTISINDHPMTSPAQLRKICGFVAQEDNLLPLLTVKETLLFSAKFRLKEMTPNDREMRVESLMQELGLFHVSDSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGLDSTSALHVIELLSSMVKQRQRTVVLSIHQPSYRILQYISKFLILSHGSVVHNGSLESLEETITKLGFQIPIQLNALEFSMEIIRRLEDSTSKFDTYTIEENELFPNPLWPEEENSRVQYYTESFGKHCYAYLMETLFLCSRFWKIIYRTKQLFLARTLQALVGGFGLASVYIKVRKDEEGIAERLGLFAFSLSFLLSSTVEALPIYLQERSVLMKEASRGAYRISSYMIANTLVFLPFLFVVSILFAVPVYWIVGLNPSLSAFTFFTFVVWLIVLMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWLFMYYVSLYRYPLDALLTNEYWNVRTECFSEQTENAHCLITGFDVLKSRGLEKDHRWMNVGIMLGFFVFYRVLCWIILARKASKTTI* 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1610 647 ProSitePatterns ABC transporters family signature. 208 222 IPR017871 GO:0005524
Lja6g1610 647 Gene3D - 64 343 IPR027417 -
Lja6g1610 647 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 3 640 - -
Lja6g1610 647 Pfam ABC-2 type transporter 374 581 IPR013525 GO:0016020|GO:0140359
Lja6g1610 647 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 51 309 IPR003439 GO:0005524
Lja6g1610 647 Pfam ABC transporter 83 236 IPR003439 GO:0005524
Lja6g1610 647 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 300 IPR027417 -
Lja6g1610 647 PANTHER ABC TRANSPORTER G FAMILY MEMBER 23 3 640 - -
Lja6g1610 647 SMART AAA_5 92 294 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1610 Lja-Chr6 42937242 42939221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1610 64 296 Calmodulin-binding Proteins AT2G36910 28.807 7.86e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1610 K05681 - gmx:100783883 1066.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1610 6 42937242 42939221 Lja6g1610 6 42937242 42939221 ECH