Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1606 ATGGCCGATCAGCACCATGGCATTCCCATGTCCTTCTCACCCAACATCGATGACATCTCCACTGGTCAGCAGCTGCAGCAACAGTATGCCTCCGCCCCCGTCCCTTATGTCGGCGACGCCTCTGGGTTTTACTTCCAGCAACAATATGCTCCTTATGCCGCTGCCGCTACCTTCCCCAACCTACAGGAGGCAGGGTCCTCCTCCACCAAGAAGGTCCGCGGTAGGCCGCCGGGCTCTAGGAACAAGCCTAAGCCCCCTGTGATCGTCACCCAGGATATTGATTACCCTGTGAAGCCAGCCGTCATCGACATTGGGAGTGGCTTTGATGTCGTGGAGGCGACCGTCCTAGTAGCCCGCCGCCGCAATGCCGGCATTGCCGTGCTCCATGCTGCGGGCGCCGTTAACAACGTGAGGCTTTGCCACCCTTTGACCCAGGCCGCACCTTTTACCGTTCATGGCCCCTTTAATTTGTTGGGCTTCTCCGGCTCTTATTTGACACCATCTGCTATCAGCGGTGGATTTCCTCCTCCTTCTTTGCCGCCGTTCATCCCCAACCTCCCTCCCTCCGCAATCCGCTCGTCCTTCGGGATCACCCTCACTAATCCCCAGGGCTATGTGTTTGGTGGGACTGTTGCTGGGAAGGTCGTGGCTGCGGATCAGGGTGTAACCGTGACTGCTTTGCTTTTCAAGAACCCAGAGTATCATAACATTGGTGTCCTTGAATATGACATTGTGGAAGAAGATATTGATAACGAAGACGGCGGTGATGGTGATCATGCAGGTGTTGGCGGTTCTGGTGGCGGCGGCGCTGCTGTTGCTAGCGGTTCTACCATGCCTGTTTTTGGTTCGGCTACAATGGGTTCCAGTGTCCCTGTTAGTGGTTCTGGCGGCGGCGGAGGCCTTGGTGCTAGTGGTTTCGGCATGCCTGTTTTTGGTTCGGCTCCTACTCCTATTTCAATGGGTTTCTCTCCTGTTTCAATGGGTTCTGGTTTCCCTATTGGTGGTTCTAGTGGTGGAGGCCTTGGTGCTAGTGGTTCTAGCATGCCTGTTTTTGGTTCGGCTCCTACTCCTATTTCAATGGGTTTCTCTCTTGTTTCAATGGGTTCTGGTTTCCCTATTGGTGGTTCTAGTGGTGGAGGCCCTGGTGCTAGTGGTTCCAGCATGCCTGCTTTCAGCTTGGGTCTGGCTCCGACTTCCATTCCGATGGGTTTCAGTGTCCCTGCTAGTGGTTCTGGCGGCGGAGGACTAGGTGCTAGTAGTTCCAGCATGCCTGCTTTCAGTCTCGGTCTGGCTCCGACTCTAGCTCCAATGGATTATGGTGTCCCTAGTCCCAATGTCATGCATTGGGGCCATGGTCAACCCGGAGCTCACTCACCATACTATTGA 1386 0.5505 MADQHHGIPMSFSPNIDDISTGQQLQQQYASAPVPYVGDASGFYFQQQYAPYAAAATFPNLQEAGSSSTKKVRGRPPGSRNKPKPPVIVTQDIDYPVKPAVIDIGSGFDVVEATVLVARRRNAGIAVLHAAGAVNNVRLCHPLTQAAPFTVHGPFNLLGFSGSYLTPSAISGGFPPPSLPPFIPNLPPSAIRSSFGITLTNPQGYVFGGTVAGKVVAADQGVTVTALLFKNPEYHNIGVLEYDIVEEDIDNEDGGDGDHAGVGGSGGGGAAVASGSTMPVFGSATMGSSVPVSGSGGGGGLGASGFGMPVFGSAPTPISMGFSPVSMGSGFPIGGSSGGGLGASGSSMPVFGSAPTPISMGFSLVSMGSGFPIGGSSGGGPGASGSSMPAFSLGLAPTSIPMGFSVPASGSGGGGLGASSSSMPAFSLGLAPTLAPMDYGVPSPNVMHWGHGQPGAHSPYY* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1606 461 MobiDBLite consensus disorder prediction 1 24 - -
Lja6g1606 461 MobiDBLite consensus disorder prediction 63 88 - -
Lja6g1606 461 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 224 IPR005175 -
Lja6g1606 461 Gene3D - 98 246 - -
Lja6g1606 461 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 56 282 - -
Lja6g1606 461 CDD DUF296 101 217 IPR005175 -
Lja6g1606 461 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 56 282 IPR014476 GO:0003680
Lja6g1606 461 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 232 - -
Lja6g1606 461 ProSiteProfiles PPC domain profile profile. 94 250 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1606 Lja-Chr6 42912761 42914146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1606 52 273 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.931 5.46e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1606 - - lja:Lj2g3v1280070.1 181.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1606 6 42912761 42914146 Lja6g1606 6 42912761 42914146 ECH