Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1603 ATGACTTCATCACTCGTGCAGATCCAAGACGAGGAGCAGGTCGTCCTCACCCACGATTTTCATGATCTTTCCATCGAAGATCATCTGGTTGAAAAGGGGAGTGATGAAGAGACTCACAAAGGGGGATTTGGAAACCATGGGGGAATATGTGCTATTTGCTTGGATAAGATAGTGCTGCAGGAGACTGCTCTTGTTAAAGGTTGCGAGCATGCTTACTGTGTAACGTGCATCCTTCGCTGGGCCACATACAACAATAAAGTTACGTGCCCTCAGTGCAAAAATCCATTTGAGTTCCTCAATGTCCATCGCTCACTTGATGGCAGCATTGAGGATTACATGTTTGAGGAAAGTGTTTGCCTACTCCTTCGGGCCAAATGGTTCAAACCTTTAACTGTCGAGGACCATGTGGTGGTTCATGAAGATACTTTATTAGATGAACTTGAAGATTATTATTATCATTATGAGGAGGATGACGAAGATCTAGATGATGCTTACTATGGTGGCTCGTCAAGTTTCCGCATTGGCAACCGTAGATGGGGAGACAATGGTTATGTAAGAGCTGGGCGTCAAGAAGCTCGGCCAGTCCATAGATCAAACACTGATAATTCAGGAGCAAGTTCGGGAGCAAGTTCATCCCGCCAGCCAAAGAAGAAAGAGGCTGCAAAAAGTGCTGCCACCACAGGGAGACGGGCAAAGAGGGCACTGAAAAGGGAAGCTGCTGATAAGGCAGCAGAAGCAAAGCATCAGCAGCATTTAATTAGGTTGGGCAGGAAGTGA 777 0.4633 MTSSLVQIQDEEQVVLTHDFHDLSIEDHLVEKGSDEETHKGGFGNHGGICAICLDKIVLQETALVKGCEHAYCVTCILRWATYNNKVTCPQCKNPFEFLNVHRSLDGSIEDYMFEESVCLLLRAKWFKPLTVEDHVVVHEDTLLDELEDYYYHYEEDDEDLDDAYYGGSSSFRIGNRRWGDNGYVRAGRQEARPVHRSNTDNSGASSGASSSRQPKKKEAAKSAATTGRRAKRALKREAADKAAEAKHQQHLIRLGRK* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1603 258 MobiDBLite consensus disorder prediction 189 258 - -
Lja6g1603 258 ProSitePatterns Zinc finger RING-type signature. 68 77 IPR017907 -
Lja6g1603 258 MobiDBLite consensus disorder prediction 197 214 - -
Lja6g1603 258 SMART ring_2 50 92 IPR001841 -
Lja6g1603 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 154 IPR013083 -
Lja6g1603 258 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 258 - -
Lja6g1603 258 Pfam Ring finger domain 50 93 IPR001841 -
Lja6g1603 258 MobiDBLite consensus disorder prediction 215 251 - -
Lja6g1603 258 ProSiteProfiles Zinc finger RING-type profile. 50 93 IPR001841 -
Lja6g1603 258 SUPERFAMILY RING/U-box 49 99 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1603 3 258 C3H Transcription Factor Family AT5G19430 53.704 2.25e-88 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1603 - - lja:Lj0g3v0250279.1 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1603 6 42878567 42882776 Lja6g1603 6 42878567 42882776 ECH