Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1601 ATGTGGCCCGGCGCTTCTTCCGCCAGGCCAATCAGCTATAGCCACGTGGCGTCCGACATGGTTGGCCTCCGCGATGTTTTCCTGGTGGCTCCGGCCTCCTCCTTCAACCACCACAGCGAAAGTCTCATGCCAGATCCGCACTTGAACAGTTCCAACAACCCCGTAACCGCCCTCGGCGTTGGCATGATCCCTCTCCTCGGTGGTGGAATTCAGTTATGGCACGACCAACAGCAACAACAACAGCATGAGCAGAATTATTTGAAGAAACACGCTCTTGTTGAGCACGATAACGGTGATGGTGGCGGTGGAGGGATTACGGCGTTAGTTGCAACCAGCGGCGGCGGGACGGCCACGTGTCAGGACTGCGGGAACCAGGCGAAGAAGGATTGCGGACACAGGAGGTGCAGGTCGTGCTGCAAGAGCAGGGGTTTTGATTGCCCTACTCACGTGAAGAGCACGTGGGTTCCCGCGGCGAGGAGGCGGGAGCGGCAGGTTATGGCGGAGAGGGCGGCGGCTGCGGGGTCCAGCGCTTCCACTTCCGGTCACGCTAAGAAGCCTAGGCTTGTTGCTTCACAGACCACAACCACCACTACAACCTCTCACACTTCCACTTCCAACACCACTCCCCCTAGGAGCTTTGAAACTAGCTCTAGCCATCAAGATGTAAGTTTCAAAGAGTCGTTGCCTCGTCAAGTGCGTGCACCGGCGGTGTTCAAGTGTGTTCGAGTGACGGCGGTGGATGGTGGCGAAGATGAGTTTGCCTATCAGGCAATGGTGAAGATTGGTGGACACTTGTTCAAAGGGCTTCTTTATAATCAAGGGGTTGAGAATAGAGATGGTTATCCTGATCTATCTGAATTGCATTTAGGTGGTAGAAATGGGGTTTCATCTTCATCTCCAATGATGAATCCTTCTTTTGATGTTTATGTAGCTTCAGGTAGTGGTGGGTTTCTTGGAGGTTCATCAACCTATGGTAACCCAATATAG 987 0.538 MWPGASSARPISYSHVASDMVGLRDVFLVAPASSFNHHSESLMPDPHLNSSNNPVTALGVGMIPLLGGGIQLWHDQQQQQQHEQNYLKKHALVEHDNGDGGGGGITALVATSGGGTATCQDCGNQAKKDCGHRRCRSCCKSRGFDCPTHVKSTWVPAARRRERQVMAERAAAAGSSASTSGHAKKPRLVASQTTTTTTTSHTSTSNTTPPRSFETSSSHQDVSFKESLPRQVRAPAVFKCVRVTAVDGGEDEFAYQAMVKIGGHLFKGLLYNQGVENRDGYPDLSELHLGGRNGVSSSSPMMNPSFDVYVASGSGGFLGGSSTYGNPI* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1601 328 MobiDBLite consensus disorder prediction 173 225 - -
Lja6g1601 328 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 118 160 IPR006510 -
Lja6g1601 328 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 228 275 IPR006511 -
Lja6g1601 328 Pfam Domain of unknown function (DUF702) 116 276 - -
Lja6g1601 328 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 20 327 IPR007818 GO:0003700|GO:0006355
Lja6g1601 328 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 20 327 - -
Lja6g1601 328 MobiDBLite consensus disorder prediction 163 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1601 Lja-Chr6 42855515 42857831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1601 2 309 C2H2 Transcription Factor Family AT5G12330 52.395 2.69e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lja6g1601 DUF702 9.1e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1601 - - jre:108994634 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1601 6 42855515 42857831 Lja6g1601 6 42855515 42857831 ECH