Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1599 ATGTCGCGGACTGATAGCATGACGATGACGACGACGGCGACTTCAGATCCTAACAGAACTGGTACTGCAGAAAGAGACACTGAGCAGGCCATTACTGCATTGAAGAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGGGGGAAGCCAAAGTTTTGCCCCTTCCGGCTTTCCAATGACGAATCTGTCTTGATATGGTTCTCAGGAAAAGAAGAGAAACGTCTTAAACTAACTAATGTTTCTAGAATTATATCTGGACAACGAACGCCTATCTTTCAAAGATATCCACGGCCTGAGAAGGAATACCAGTCATTTTCACTTATCTACAGTGATAGGTCACTGGATTTGATTTGCAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGGTTGAAAACATTGATTTCACGCAGTCATAACCGGAAGTGGAGAACAGAGTCAAGAAGTGACGGCATTCCATCTGGAGCTAATAGTCCTCGAACGTACACTAGAAGTTCTCCATTGAATTCTCCATTTGGTAGTAATGAAAGCTTTCAAAAGGATAGTGGGGATCATCTTCCTCTTCATAGCCCATATGAAAGTCCTCCCAAGAATGGTTTGGATAAGGCATTTTCTGATGTGATTTATTATCCTCTTCCTCCAAAGGGTTTCTTCCCTCCAGATTCTGCCAGTGGTTCAGTCCACTCTGTGTCGTCAGTTGGATCTGATAGCATGCATGGTCACATGAAGACAATGCCTATGGATGCTTTTCGAGTTAGTTTATCAAGTGCTGTTAGTTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTTTGGGTGGTGGAGCTCACCAAGTTGGAAGTTGCTTTGATGCTAAAATGGATTCTCTACTGCCCAAAGCCTTGGAATCGGCAGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGTAAACATGCAGCCTTAGTGTCCAAACAAGGTGAAATTTTCTCTTGGGGGGAAGAATCAGGAGGCAGGCTTGGGCATGGCGTTGACTCTGATGTTCCCCATCCAAAGCTTATTGAATCTCTAAGTAGTACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGAACTTACAATTATGGTCTTCTGGGGCATGGAAATCAGGTGAGCCACTGGGCCCCAAAAAGAGTACATGGCCTCTTGGAGGGCATACATGTTTCTTCTATTTCTTGTGGTCCATGGCACACTGCTGTTGTAACCTCTGCGGGACAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAGTGTTTCCCTTCCAAGAGAAATAGAGTCCCTGAAGGGTCTTCGCACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGGCTTGGGCATGGTGACAAGGAAGCCAAACTTGTTCCCACCTGTGTTGTAGCCCTACTTGAACCCAATTTTTGTCAGGTTGCTTGTGGTCATAGTATGACTGTTGCACTTTCTAGATCAGGCCATGTCTATACCATGGGCAGTTGTGTCTATGGTCAGTTAGGAAATCCTAAAGCTGATGGGAAGCTACCAACTCGTGTTGAAGGAAAGCTTTCAAAAAGCTTTGTGGAGGAAATAGCTTGTGGTGCATATCATGTTGCGGTTTTAACTTCAAGGACTGAAGTTTACACTTGGGGTAAGGGTGCAAATGGTCGTTTAGGCCATGGAGATACTGATGATAAAAACTCCCCAACATTAGTAGAAGCATTGAAAGACAAACAAGTCAAAAGTATTGCTTGTGGTACAAATTTCACCGCAGCCATATGCCTGCATAAGTGGGTATCTGGTGTTGACCAATCCATGTGTTCTGGTTGCCGTCTGCCATTTAATTTCAAAAGGAAACGCCACAATTGTTATAATTGTGGACTTGTTTTTTGCCATTCATGCAGCAGTAAGAAGTCTGTTAAGGCATCAATGGCACCAAACCCCAACAAACCGTATCGTGTCTGTGATAGTTGTTATAATAAGATAAAGAAAGCTACAGTGACTGATTCTTCGTCTCAGTCTTCAATGAGCAGAAGAGGAAGTATTAATCAGGGGTCACTTGAGTTTGTTGGTAAGGATGATAAATTGGATTCCAAATCAAATAATCAGATTGGCAGGTTCTCTTCAATGGAATCCTTGAATCAAGTGGACAGCAGATCTTCAAAGAAAAATAAGAAATTGGAATTCAACAGTAGCCGTGTCTCGCCTGTTCCAAATGGAGGTTCACAATGGGGAGCAAGGAATATTTCCAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGTCAACATCCCCAGTATCTAGACGGCCTAGTCCACCTCGTTCAACTACTCCAACCCCAACGCTGGGAGGACTTACATCCCCGAAGATGGTCGTGGATGATGCCAAGATGACCAATGACAGCCTCAGTCAAGAGGTTGTTAAATTAAGATCACAGGTGGAAAGCTTGAATCGGAAAGCCCAGCTTCAAGAAATTGAGTTGGAAAGAACAACTAAACAGCTAAAAGAAGCAATATCAATTGCCAACGAAGAGACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCGCTTACTGCCCAGTTGAAGGACATGGCCGAGAGGCTGCCTATAGGAGCAACCAGGAATGTTAGATCACCATCTCTTGCTTCCTTTGGTTCCGACCTTGGTTCCAATGACGTTACCAATGCTACGATTGATCAATTGACTATTCAAACAAGAAGCCAAGAGTCAGACTTAACAGGATCAAATGACCAGTTGCTTTCAAATGGATCAAGCACTATCACCAACCGTAGTGCAGGTCACGGTAAACACAGTCAATCAAATGCAACTAGCAGAAATGGGTACAAAACAAAGGATAACGAGTCTCGAAATGAAACTGAATGGGTTGAGCAAGATGAACCTGGTGTATACATTACTCTCACCTCTCTACCAGGAGATGTAATAGATCTTAAGAGAGTTCGCTTCAGTCGAAAGCGGTTTAGTGAGAAACAAGCAGAACAATGGTGGGCTGAGAATCGGGCAAGAGTATATGAACTGTACAACGTGCGCTTGATTGACAAGTCAAGTATTGGTGTTGGGAGTGAGGAACTGGCTCATTGA 3342 0.4363 MSRTDSMTMTTTATSDPNRTGTAERDTEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKRLKLTNVSRIISGQRTPIFQRYPRPEKEYQSFSLIYSDRSLDLICKDKDEAEVWFSGLKTLISRSHNRKWRTESRSDGIPSGANSPRTYTRSSPLNSPFGSNESFQKDSGDHLPLHSPYESPPKNGLDKAFSDVIYYPLPPKGFFPPDSASGSVHSVSSVGSDSMHGHMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGAHQVGSCFDAKMDSLLPKALESAVVLDVQNIACGGKHAALVSKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLSSTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWAPKRVHGLLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTCVVALLEPNFCQVACGHSMTVALSRSGHVYTMGSCVYGQLGNPKADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDKNSPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMAPNPNKPYRVCDSCYNKIKKATVTDSSSQSSMSRRGSINQGSLEFVGKDDKLDSKSNNQIGRFSSMESLNQVDSRSSKKNKKLEFNSSRVSPVPNGGSQWGARNISKSFNPVFGSSKKFFSASVPGSRIVSRSTSPVSRRPSPPRSTTPTPTLGGLTSPKMVVDDAKMTNDSLSQEVVKLRSQVESLNRKAQLQEIELERTTKQLKEAISIANEETAKCKAAKEVIKSLTAQLKDMAERLPIGATRNVRSPSLASFGSDLGSNDVTNATIDQLTIQTRSQESDLTGSNDQLLSNGSSTITNRSAGHGKHSQSNATSRNGYKTKDNESRNETEWVEQDEPGVYITLTSLPGDVIDLKRVRFSRKRFSEKQAEQWWAENRARVYELYNVRLIDKSSIGVGSEELAH* 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1599 1113 MobiDBLite consensus disorder prediction 139 196 - -
Lja6g1599 1113 MobiDBLite consensus disorder prediction 1030 1044 - -
Lja6g1599 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 610 661 IPR000408 -
Lja6g1599 1113 Pfam Transcription factor regulating root and shoot growth via Pin3 1039 1094 IPR013591 -
Lja6g1599 1113 Gene3D - 225 394 IPR009091 -
Lja6g1599 1113 Gene3D - 395 501 IPR009091 -
Lja6g1599 1113 Gene3D - 503 673 IPR009091 -
Lja6g1599 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 273 334 IPR000408 -
Lja6g1599 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 387 441 IPR000408 -
Lja6g1599 1113 MobiDBLite consensus disorder prediction 838 868 - -
Lja6g1599 1113 MobiDBLite consensus disorder prediction 795 811 - -
Lja6g1599 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 442 493 IPR000408 -
Lja6g1599 1113 SUPERFAMILY RCC1/BLIP-II 272 663 IPR009091 -
Lja6g1599 1113 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 674 734 IPR013083 -
Lja6g1599 1113 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 27 1099 - -
Lja6g1599 1113 MobiDBLite consensus disorder prediction 1 26 - -
Lja6g1599 1113 Pfam Pleckstrin homology domain 28 134 IPR001849 -
Lja6g1599 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 506 557 IPR000408 -
Lja6g1599 1113 ProSiteProfiles BRX domain profile. 1040 1095 IPR013591 -
Lja6g1599 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 442 490 IPR000408 -
Lja6g1599 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 557 606 IPR000408 -
Lja6g1599 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 386 438 IPR000408 -
Lja6g1599 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 611 658 IPR000408 -
Lja6g1599 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 505 554 IPR000408 -
Lja6g1599 1113 Pfam Regulator of chromosome condensation (RCC1) repeat 335 383 IPR000408 -
Lja6g1599 1113 CDD FYVE_like_SF 671 724 - -
Lja6g1599 1113 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 480 490 IPR000408 -
Lja6g1599 1113 MobiDBLite consensus disorder prediction 987 1029 - -
Lja6g1599 1113 Pfam Unstructured region between BRX_N and BRX domain 964 1033 - -
Lja6g1599 1113 SUPERFAMILY PH domain-like 26 134 - -
Lja6g1599 1113 SUPERFAMILY FYVE/PHD zinc finger 662 729 IPR011011 -
Lja6g1599 1113 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Lja6g1599 1113 PRINTS Chromosome condensation regulator RCC1 signature 444 458 IPR000408 -
Lja6g1599 1113 PRINTS Chromosome condensation regulator RCC1 signature 428 444 IPR000408 -
Lja6g1599 1113 PRINTS Chromosome condensation regulator RCC1 signature 318 331 IPR000408 -
Lja6g1599 1113 PRINTS Chromosome condensation regulator RCC1 signature 605 626 IPR000408 -
Lja6g1599 1113 PRINTS Chromosome condensation regulator RCC1 signature 547 565 IPR000408 -
Lja6g1599 1113 PRINTS Chromosome condensation regulator RCC1 signature 387 403 IPR000408 -
Lja6g1599 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 386 IPR000408 -
Lja6g1599 1113 MobiDBLite consensus disorder prediction 757 811 - -
Lja6g1599 1113 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 27 1099 - -
Lja6g1599 1113 Pfam Transcription factor BRX N-terminal domain 923 951 IPR027988 -
Lja6g1599 1113 MobiDBLite consensus disorder prediction 766 782 - -
Lja6g1599 1113 Pfam FYVE zinc finger 662 728 IPR000306 GO:0046872
Lja6g1599 1113 Gene3D - 25 143 IPR011993 -
Lja6g1599 1113 SMART fyve_4 660 729 IPR000306 GO:0046872
Lja6g1599 1113 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Lja6g1599 1113 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 321 331 IPR000408 -
Lja6g1599 1113 CDD PH_PLC_plant-like 25 135 - -
Lja6g1599 1113 MobiDBLite consensus disorder prediction 987 1044 - -
Lja6g1599 1113 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 666 728 IPR017455 -
Lja6g1599 1113 MobiDBLite consensus disorder prediction 149 180 - -
Lja6g1599 1113 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 558 609 IPR000408 -
Lja6g1599 1113 Coils Coil 872 948 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1599 Lja-Chr6 42790226 42801462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1599 932 1104 Major Intrinsic Protein MIP AT1G31880 33.514 2.80e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1599 - - gmx:100791947 1907.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1599 6 42790226 42801462 Lja6g1599 6 42790226 42801462 ECH