Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1589 ATGTCCTCGTTGAGACTAATAAATCTTCGGAACAACTTCTTCAATGGCCAACTTCCAGAAGAAATGTGTCAACATGCTCACTCACTCCAACACATTTCTATCTTAAATAACAAAGTTGGGGGAATCATTCCAAGGTCTATTAACAACTGCACCTCCCTCAAACGCTTATTTTTGGGAGCAAACATTTTCACAGGTACCATACCTTATGAGATTGGTGACTACTTAAAAAACCTTGAGAAACTGCATTTGCAAGGCAACAGATTGAGAGGGTCTATTCCAGCATGCATCTTCAACATCTCAGGGCTGATTAGTTTGTCACTATCAAATAACCGACTCTCAGGGACTATTCCAATTCATGCATACCATAGTCTATCCAACCTCCAATACCTGTACCTTGCAGGAAACAATCTTAATGGTGATATTCCAAGTGGCCTTTTCAATGCTACAGAGCTTCTTGAACTAGTAATTGCCAACAACACATTGACAGGAATCATACCTGAATCAGTTGGGAATTTAAGAAATCTCCAACTATTTTATCTGGTAGGAAACAAGTTGACTAGTGATCCAGCCTCTTCTGAGATGGGTTTTCTCACTTCATTGACAAAGTGTAGACAATTGAAAAAGATTCTGCTATCCATAAATCCCCTAAATGGAACACTTCCAAATTCTATTGGAAACCTGTCAAAGTCTCTTGAAACTTTTGATGTCTGGAGCTGTAATCTCAAGGGTAAAATCCCTTCACAGATTGGCAATTTAAAGAGCTTGTTTGACATAAATCTTAAAGAAAACAAACTTACTGGACCGGTCCCTAGTACAATTGGCACTTTGCAGCTTCTCCAACGTTTGGATCTTTCTGACAACAAATTAAATGGTTCAATTCCAGATCAGATTTGCCATTTGGTCAAATTGAATGAGTTGCGCCTTAGCAAAAATCAGATTTCTGGGCCAGTGCCAGAATGCATGAGGTTCCTTAGTTCTCTAAGAAACCTTTACTTGGATTCCAATAACTTGAAATCTACAATACCCTCTTCCCTTTGGAGCCTTACAGATATATTGGAGGTAAACTTATCCTCTAATGGTTTTGTAGGTTCATTGCCAGCTGAGATAGGTGCAATGTATGCTCTGATAAAATTGGACATATCAAACAATCACTTTTCAGGGAAACTTCCAATTTCTATTGGTGGCTTGCAACAGATACTGAACCTGTCATTAGCTAATAACATGTTACAAGGGCCGATTCCTGATTCAGTTGGAAAAATGTTAAGCTTGGAATTTTTGGACCTTTCTCACAACCTTTTATCAGGCATCATCCCCAAGTCAATTGAAAAACTTCTTTATCTCAAATCTATTAACTTGTCTTATAATAAACTAGAAGGAGAAATTCCCTCTGGTGGCAGTTTTGCAAATTTCACAGCTCAATCCTTCTTCATGAATGAAGCACTTTGTGGGAGACTTGAGCTAGAAGTCCAACCATGTCCTAGTAATGGTGCAAAACATAACAGGACAGGAAAAAGGCTTTTACTAAAATTGATGATACCTTTTATTGTGTCTGGCATGTTTCTTGGTTCTGCAATTCTTCTAATGTACAGGAAAAACTGCATTAAAGGTTCAATTAACATGGACTTCCCGACATTGCTAATTACAAGTAGAATTTCCTACCATGAACTTGTGGAGGCAACACATAAATTTGATGAGAGCAATCTTCTTGGAAGTGGAAGCTTTGGTTCTGTGTACAAAGGTAAGCTTTCAAATGGACTAATGGTTGCAATTAAAGTATTCCATTTGGATAATGAACAAGAAGCATCAAGGAGTTTTGAAAATGAATGTGAAGCATTGCGCAATCTTCGTCACCGTAATCTAGTTAAAGTCATCACTAGTTGCTCCAATTCCTTTGATTTCAAGGCCCTAGTAATGGAACATGTTCCAAATGGGAACTTGGAGAAGTGGTTGTATTCTCATAACTATTTCCTAAGTTTCATGGAAAGACTAAACATAATGATAGATATTGCATCTGCCTTGGAGTATCTCCATCACGGTAACCCCAACTCTGTTGTGCACTGTGACCTGAAGCCAAGCAATGTTTTGTTGGATGAAGATATGGTAGCTCATGTGTGTGATTTTGGCTTATCTAAACTCATGGAAGAAAGCCAACTTCAAGTGCATACAAAAACACTAGCAACTCCTGGTTATATTGCACCAGAATATGGATTTGAAGGTGTTGTGTCCATTAAAGGAGATGTTTACAGCTTCGGTATCATGCTTTTGGAAGTATTTACAAGAAAGAAACCAATTGATGAAATGTTTATAGAGGGAACAAGTTTAAGGTCATGGATCCAAGAGTCACTGCCAGATGAGATTATTCAAGTTATAGACCCGAATCTACTGGAGGGAGAGGAACAACTTATTTCTGCCAAGAAAGAAGCTTCATCAAACATCATGTTGTTGGCTTTGAATTGCTCCGCAGACTCCATTGATGAAAGAATGAGTATGGATGAAGTCTTACCTTGCTTGATCAAAATCAAAACCATATTTTTGCATGAAACTACACCGCGATCCCAGCGCCATCGCGCCTGA 2574 0.3846 MSSLRLINLRNNFFNGQLPEEMCQHAHSLQHISILNNKVGGIIPRSINNCTSLKRLFLGANIFTGTIPYEIGDYLKNLEKLHLQGNRLRGSIPACIFNISGLISLSLSNNRLSGTIPIHAYHSLSNLQYLYLAGNNLNGDIPSGLFNATELLELVIANNTLTGIIPESVGNLRNLQLFYLVGNKLTSDPASSEMGFLTSLTKCRQLKKILLSINPLNGTLPNSIGNLSKSLETFDVWSCNLKGKIPSQIGNLKSLFDINLKENKLTGPVPSTIGTLQLLQRLDLSDNKLNGSIPDQICHLVKLNELRLSKNQISGPVPECMRFLSSLRNLYLDSNNLKSTIPSSLWSLTDILEVNLSSNGFVGSLPAEIGAMYALIKLDISNNHFSGKLPISIGGLQQILNLSLANNMLQGPIPDSVGKMLSLEFLDLSHNLLSGIIPKSIEKLLYLKSINLSYNKLEGEIPSGGSFANFTAQSFFMNEALCGRLELEVQPCPSNGAKHNRTGKRLLLKLMIPFIVSGMFLGSAILLMYRKNCIKGSINMDFPTLLITSRISYHELVEATHKFDESNLLGSGSFGSVYKGKLSNGLMVAIKVFHLDNEQEASRSFENECEALRNLRHRNLVKVITSCSNSFDFKALVMEHVPNGNLEKWLYSHNYFLSFMERLNIMIDIASALEYLHHGNPNSVVHCDLKPSNVLLDEDMVAHVCDFGLSKLMEESQLQVHTKTLATPGYIAPEYGFEGVVSIKGDVYSFGIMLLEVFTRKKPIDEMFIEGTSLRSWIQESLPDEIIQVIDPNLLEGEEQLISAKKEASSNIMLLALNCSADSIDERMSMDEVLPCLIKIKTIFLHETTPRSQRHRA* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1589 857 SUPERFAMILY L domain-like 2 147 - -
Lja6g1589 857 Pfam Leucine rich repeat 77 137 IPR001611 GO:0005515
Lja6g1589 857 Pfam Leucine rich repeat 279 337 IPR001611 GO:0005515
Lja6g1589 857 Pfam Leucine Rich Repeat 422 444 IPR001611 GO:0005515
Lja6g1589 857 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 845 - -
Lja6g1589 857 ProSitePatterns Serine/Threonine protein kinases active-site signature. 684 696 IPR008271 GO:0004672|GO:0006468
Lja6g1589 857 SMART serkin_6 563 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1589 857 Gene3D Ribonuclease Inhibitor 1 194 IPR032675 -
Lja6g1589 857 SUPERFAMILY RNI-like 123 463 - -
Lja6g1589 857 SUPERFAMILY Protein kinase-like (PK-like) 538 844 IPR011009 -
Lja6g1589 857 ProSiteProfiles Protein kinase domain profile. 563 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1589 857 Pfam Protein kinase domain 564 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1589 857 Coils Coil 595 615 - -
Lja6g1589 857 ProSiteProfiles Leucine-rich repeat profile. 422 443 IPR001611 GO:0005515
Lja6g1589 857 PRINTS Leucine-rich repeat signature 420 433 - -
Lja6g1589 857 PRINTS Leucine-rich repeat signature 279 292 - -
Lja6g1589 857 SMART LRR_typ_2 276 300 IPR003591 -
Lja6g1589 857 SMART LRR_typ_2 1 25 IPR003591 -
Lja6g1589 857 SMART LRR_typ_2 420 443 IPR003591 -
Lja6g1589 857 SMART LRR_typ_2 172 195 IPR003591 -
Lja6g1589 857 SMART LRR_typ_2 124 148 IPR003591 -
Lja6g1589 857 SMART LRR_typ_2 324 348 IPR003591 -
Lja6g1589 857 SMART LRR_typ_2 75 99 IPR003591 -
Lja6g1589 857 PANTHER - 1 845 - -
Lja6g1589 857 Gene3D Phosphorylase Kinase; domain 1 541 640 - -
Lja6g1589 857 Gene3D Transferase(Phosphotransferase) domain 1 641 851 - -
Lja6g1589 857 ProSitePatterns Protein kinases ATP-binding region signature. 569 591 IPR017441 GO:0005524
Lja6g1589 857 Gene3D Ribonuclease Inhibitor 195 501 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1589 Lja-Chr6 42609887 42613586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1589 1 848 Receptor kinase-like Gene Family AT3G47570 37.121 1.91e-167 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Lja6g1589 Pkinase 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1589 - K13420 lja:Lj6g3v0938090.1 1636.31