Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1582 ATGGATCAGCATGGTGGAGTTGCAACTGGGTCGCATGAAAGAAACGAACTTGTTCGAGTTAGACACGGTTCTGATCATGGGTCCAAACCCGTAAAGAATTTGAATGGTCAAATCTGTCAAATATGTGGCGAAACTGTTGGCCTAACAGCCAACGGCGATATCTTCGTTGCTTGCCATGAGTGTGCTTTCCAACTTTGTCATCCTTGTTATGAATACGAGAGAAATAATGTGAGCCCATACTGTCCCCAGTGCAAGACTAGATACGAAAGTCACAAAGAGAGTTCTCAAATGGAGGGAGATGATGATGATGATGATGATGAAGATGATGTCGATGATCTAGAGAATGAGGTCAAGTATGGTCAAGGAAATAGAATGAAGGCAAGGCTTCAATGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCAAATGCAAAATCCTCATCTGACAAATGGGCAGCTGATGTCTGGTGAGAATCTATGTGCTACTACATCAGGTCCTATGGGTCAATCCAAAAAGGTTCAGTCACTTCCATATGTTGATCCAAAGCAACCAGGTCTTGAGAGTGATGAGGAGATCAGAAGAGTACCGGAGTTTGGAGGTGAGTCTGCTGCCACTTCAGCTTCTCGTCCTGACACTGGTTCAAATCCTGGTCCAGAGCGTGTTCAGGGAGCAGGGGAGGGTCAAAAGAAGAGAGGGAGAAGCTCAGCAGACAAAGAGAGCAAGCGGTTGAAGAGGCTACTGAGGAACAGAGTTTCAGCTCAGCAAGCAAGGGAGAGGAAAAAGGCATACTTGACTGATTTGGAAACAAAAGTCAAAGACTTAGAGACGAATAATTCAGAGCTCAAAGAGAGACTTTCCACTTTGCAGAATGAGAATCAAATGCTAAGACAGATATTGAAGAACACTACAGCAAGCAGGAGAGGGAGCAATGGTGGTACCAATAATGCTGAATGA 966 0.4462 MDQHGGVATGSHERNELVRVRHGSDHGSKPVKNLNGQICQICGETVGLTANGDIFVACHECAFQLCHPCYEYERNNVSPYCPQCKTRYESHKESSQMEGDDDDDDDEDDVDDLENEVKYGQGNRMKARLQWEEDADLSSSSGHDSQMQNPHLTNGQLMSGENLCATTSGPMGQSKKVQSLPYVDPKQPGLESDEEIRRVPEFGGESAATSASRPDTGSNPGPERVQGAGEGQKKRGRSSADKESKRLKRLLRNRVSAQQARERKKAYLTDLETKVKDLETNNSELKERLSTLQNENQMLRQILKNTTASRRGSNGGTNNAE* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1582 321 Pfam bZIP transcription factor 242 303 IPR004827 GO:0003700|GO:0006355
Lja6g1582 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Lja6g1582 321 MobiDBLite consensus disorder prediction 91 264 - -
Lja6g1582 321 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Lja6g1582 321 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 248 263 IPR004827 GO:0003700|GO:0006355
Lja6g1582 321 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Lja6g1582 321 SUPERFAMILY RING/U-box 23 110 - -
Lja6g1582 321 Gene3D Single helix bin 264 305 - -
Lja6g1582 321 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 164 311 IPR044280 GO:0000981|GO:0045944
Lja6g1582 321 MobiDBLite consensus disorder prediction 228 264 - -
Lja6g1582 321 MobiDBLite consensus disorder prediction 115 139 - -
Lja6g1582 321 SUPERFAMILY Leucine zipper domain 245 303 IPR046347 GO:0003700|GO:0006355
Lja6g1582 321 MobiDBLite consensus disorder prediction 98 114 - -
Lja6g1582 321 CDD bZIP_HY5-like 246 297 - -
Lja6g1582 321 MobiDBLite consensus disorder prediction 140 175 - -
Lja6g1582 321 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 243 306 IPR004827 GO:0003700|GO:0006355
Lja6g1582 321 SMART brlzneu 241 305 IPR004827 GO:0003700|GO:0006355
Lja6g1582 321 MobiDBLite consensus disorder prediction 14 28 - -
Lja6g1582 321 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 164 311 - -
Lja6g1582 321 Coils Coil 240 309 - -
Lja6g1582 321 MobiDBLite consensus disorder prediction 1 29 - -
Lja6g1582 321 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1582 Lja-Chr6 42503842 42509554 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1582 1 188 Glycosyltransferase AT4G32410 53.846 2.05e-50 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja6g1582 zf-UDP 1.4e-34 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1582 K10999 - aprc:113855639 516.153