Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1580 ATGGCCACTCCTTCTTTCAGTTTTGTGATCACTTGCTTCCTCTTCCTCTTTCTGTTCCTCACTACTAGTCCTGCTTCTGTTTCTTCACTTCCTCTTTCTCTGAGAAACCAAGCTTCTGTATTGGTTTCTCTCAAACAAGGTTTTGAAGCTGCTAACCACTCTTCTTTGAGCAGTTGGAAAATCTCTAACTACTTGTCCCTTTGCACCACATGGCATGGCATTCAGTGTGACCATGATAATAACATTTCTGTGGTGTCATCACTTGACATATCCAATTTAAACATTTCTGGTTCAGTTTCTGGTATTCATAGGTTACCAAACCTGAGATTCCTCAACATGTCTAACAACATGTTCAGTGGAAACTTGAGCTGGGAAATTTCACACTTGAAGGAGCTTGAGGTTCTTGATGCTTATAACAATGAGTTCAATGGTTCACTTCCTGAGAGTGTGATTCAACTCCCATGGCTCAAGCACTTGAATTTTGGAGGGAACTACTTCTCTGGGAAAATCCCTCCAAGCTATGGGAAAATGAGGGGGCTCAACTTTCTGTCTCTTGCAGGAAATGATTTGAGTGGTTTCATACCAAGTGAGATTGGGAATCTCACTAACCTTACCCATCTTTTATTGGGATACTACAATCAATTTGAAGGTGGGATCCCACCTCAATTTGGTGAATTGATCAACTTGGTTCATTTAGACCTTGCAAACTGTGGCTTGAATGGTTCAATTCCAGCTGAGTTAGGAAAACTCTACAAGCTAGACACACTCTTCTTGCAAACTAATCAGCTCACAGGATCAATCCCACCTCAGCTAGGAAACTTGACTAGTTTGAAAAATCTTGATCTTTCAGTCAACAAGCTAACAGGAGACATCCCTTATGAGTTCTCAGGCCTTCAAGAACTCACCCTCTTGAACCTCTTCATCAACAATTTCCATGGAGAAATCCCTCATTTCATTGCTGAGCTACCTAAACTGGAGGTGCTGAAGCTCTGGCAGAACAACTTCACTGGAGTGATTCCTCCAAAGCTTGGACACAATGGAAGGTTAACTGAGCTTGACCTTTCAACAAACAAGCTCACAGGACTAGTCCCAAAATCTCTATGCAGTGGAAAGAGGCTGCAGATTTTGATCTTGCTGAGAAACTTTCTGTTTGGATCTTTGCCTGATGAACTTGGTCAATGCTACACACTCCAAAGAGTTCGTTTGAGTCAAAACTACTTAACTGGTTCACTTCCACATGGTTTCCTTTACTTGCCTGAGCTCTCTCTTTTGGAACTGCAGAACAATTATCTCAGTGGTAAAATTCCACAAGAAACAAGCAAGGCAATTGCACCCTCCAGACTTGGACAATTGATTCTATCAAACAATAACTTATCAGGTTCTCTGCCAGCTTCAATAGGAAACTTTCCCAACTTGCAAATTCTTCAGCTTAGTGGAAACAGATTCTCAGGTGAAATTCCACCAGATATTGGGAGATTGAAAAACATCATCAAGTTGGATGTGAGTATGAACAACTTTTCAGGTACTATTCCTCCAGAGATAGGTAACTGTACCTTACTCACATACTTAGATTTAAGCCAAAACCAGCTATTAGGCCCTATCCCAATTCAAGTTACTCAAATTCTTATACTAAATTATCTTAATGTCTCATTGAACCACCTCAATCAAAGCATTCCCAAGGAACTTGGGACCATGAAGGGTTTAACTTCAGCAGATTTCTCTCACAATAACTTCTCAGGTTCAATACCTGAAGGAGGGCAATTTTCAATCTTTAATTCAACATCCTTTGTGGCTAACCCTCAGCTATGTGGATATGAGTTCAATCCATGCAACCTTTCTTCAACAACAGCAATGGAATCTCAAAGTGCAAAACCTGGAGTAGTCCCTGGGAAATTCAAGCTTCTTTTTGCATTGGCATTGTTGGGATGTTCATTTGTGTTTGCAACCTTAGCCATCATCAAGAGCAGAAAAGCAAGGAAACACTCCAATTCATGGAAGCTAACATCATTTCAGAAACTGGAATATGGGAGTGAAGACATTGTGGGATGCATAAAGGAAAGCAATGTCATAGGAAGAGGTGGAGCTGGGGTTGTGTACAGAGGAACCATGCCAAATGGAGAGGAAGTTGCAGTGAAGAAGTTATTAGGAATCAACAAAGGCTCTTCTCATGACAATGGCCTCTCAGCAGAAATTAAAACATTAGGTAGAATCAGGCACAGGTACATTGTGAGGTTGCTAGCATTTTGTTCAAACAAAGAGACCAATTTGCTTGTTTATGATTACATGCCAAATGGAAGCTTAGGTGAAGTGTTGCATGGGAAGAGGGGTGAGTTTCTGAAATGGGATACTAGGCTGAAAATAGCCACAGAAGCTGCAAAAGGGCTTTGCTATTTGCACCATGATTGTTCCCCTCTGATAATCCATAGGGATGTGAAGTCAAACAACATATTATTGAACTCTGATTTTGAGGCTCATGTTGCTGATTTTGGGCTTGCCAAGTTCATGCAAGATACTGGGACTTCAGAGTGCATGTCTTCCATTGCTGGTTCTTATGGCTACATAGCTCCAGAGTATGCATACACATTGAAAGTAGATGAGAAAAGTGATGTTTATAGCTTTGGAGTGGTGCTGCTAGAACTCATTACAGGGCGAAGACCAGTGGGGGACTTTGAGGAAGAAGGACTAGACATTGTTCAATGGACCAAGATGCAAACTAATTGGAACAAAGAGATGGTGATGAAGATCCTTGATGAGAGGCTAAGTCACATTCCTTTAGATGAAGCAGAGCAAGTGTTTTTTGTGGCCATGTTATGTGTTAATGAACACAGTGTGGAGAGACCAACCATGAGGGAAGTGGTTGAAATGCTGGCACAAGCAAAGCAACCAAAACACATTTGA 2898 0.4124 MATPSFSFVITCFLFLFLFLTTSPASVSSLPLSLRNQASVLVSLKQGFEAANHSSLSSWKISNYLSLCTTWHGIQCDHDNNISVVSSLDISNLNISGSVSGIHRLPNLRFLNMSNNMFSGNLSWEISHLKELEVLDAYNNEFNGSLPESVIQLPWLKHLNFGGNYFSGKIPPSYGKMRGLNFLSLAGNDLSGFIPSEIGNLTNLTHLLLGYYNQFEGGIPPQFGELINLVHLDLANCGLNGSIPAELGKLYKLDTLFLQTNQLTGSIPPQLGNLTSLKNLDLSVNKLTGDIPYEFSGLQELTLLNLFINNFHGEIPHFIAELPKLEVLKLWQNNFTGVIPPKLGHNGRLTELDLSTNKLTGLVPKSLCSGKRLQILILLRNFLFGSLPDELGQCYTLQRVRLSQNYLTGSLPHGFLYLPELSLLELQNNYLSGKIPQETSKAIAPSRLGQLILSNNNLSGSLPASIGNFPNLQILQLSGNRFSGEIPPDIGRLKNIIKLDVSMNNFSGTIPPEIGNCTLLTYLDLSQNQLLGPIPIQVTQILILNYLNVSLNHLNQSIPKELGTMKGLTSADFSHNNFSGSIPEGGQFSIFNSTSFVANPQLCGYEFNPCNLSSTTAMESQSAKPGVVPGKFKLLFALALLGCSFVFATLAIIKSRKARKHSNSWKLTSFQKLEYGSEDIVGCIKESNVIGRGGAGVVYRGTMPNGEEVAVKKLLGINKGSSHDNGLSAEIKTLGRIRHRYIVRLLAFCSNKETNLLVYDYMPNGSLGEVLHGKRGEFLKWDTRLKIATEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSDFEAHVADFGLAKFMQDTGTSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGRRPVGDFEEEGLDIVQWTKMQTNWNKEMVMKILDERLSHIPLDEAEQVFFVAMLCVNEHSVERPTMREVVEMLAQAKQPKHI* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1580 965 SMART LRR_typ_2 322 346 IPR003591 -
Lja6g1580 965 SMART LRR_typ_2 129 153 IPR003591 -
Lja6g1580 965 SMART LRR_typ_2 347 369 IPR003591 -
Lja6g1580 965 SMART LRR_typ_2 274 297 IPR003591 -
Lja6g1580 965 SMART LRR_typ_2 226 250 IPR003591 -
Lja6g1580 965 SMART LRR_typ_2 469 493 IPR003591 -
Lja6g1580 965 SMART LRR_typ_2 105 128 IPR003591 -
Lja6g1580 965 SMART LRR_typ_2 177 201 IPR003591 -
Lja6g1580 965 SMART LRR_typ_2 418 442 IPR003591 -
Lja6g1580 965 SUPERFAMILY L domain-like 39 210 - -
Lja6g1580 965 Gene3D Phosphorylase Kinase; domain 1 652 761 - -
Lja6g1580 965 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 102 963 - -
Lja6g1580 965 SUPERFAMILY L domain-like 344 609 - -
Lja6g1580 965 PANTHER UNNAMED PRODUCT 12 102 - -
Lja6g1580 965 Gene3D Transferase(Phosphotransferase) domain 1 762 964 - -
Lja6g1580 965 Pfam Leucine rich repeat 323 381 IPR001611 GO:0005515
Lja6g1580 965 Gene3D Ribonuclease Inhibitor 444 486 IPR032675 -
Lja6g1580 965 Gene3D Ribonuclease Inhibitor 487 611 IPR032675 -
Lja6g1580 965 Gene3D Ribonuclease Inhibitor 195 293 IPR032675 -
Lja6g1580 965 Gene3D Ribonuclease Inhibitor 34 194 IPR032675 -
Lja6g1580 965 ProSitePatterns Serine/Threonine protein kinases active-site signature. 806 818 IPR008271 GO:0004672|GO:0006468
Lja6g1580 965 SUPERFAMILY Protein kinase-like (PK-like) 679 956 IPR011009 -
Lja6g1580 965 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 12 102 - -
Lja6g1580 965 Pfam Leucine rich repeat N-terminal domain 36 77 IPR013210 -
Lja6g1580 965 Gene3D Ribonuclease Inhibitor 294 443 IPR032675 -
Lja6g1580 965 ProSiteProfiles Protein kinase domain profile. 684 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1580 965 SUPERFAMILY L domain-like 181 436 - -
Lja6g1580 965 Pfam Protein kinase domain 686 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1580 965 PANTHER UNNAMED PRODUCT 102 963 - -
Lja6g1580 965 SMART serkin_6 684 956 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1580 Lja-Chr6 42490975 42495184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1580 27 958 Receptor kinase-like Gene Family AT5G65700 57.632 0.0 1071
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja6g1580 Pkinase 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1580 - - gmx:100815103 1552.73