Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1579 ATGACGACCACGATCCTCAGAAGATCCTCTTCCATCTTCTCACGCCGCTTCTTCGCCGCCTTCACCTCCGTCGAGGCGCTCCACCTCCACCACCGCCGCAGCCTCATCGCCGCCGTCACTCGCATTAACGGGCTCTCCGACCTAGGAGCCAGAGCATTTCACGCGAAACCCGGACTGTTGAACTTCCACTCCTCGCTGGTTTCTCCTTCTGCGCAGCCTGCCTTGGATCACGATTACGCGCACGAGAACGATGGCTTCACTGCGAACAGCAGCGATGAAGGACTGGAGATTGCGAAGCTCGGGATCTCGCAGGAGATCGTTGATGCTCTCGCGAAGAAAGGGATCGCCAAACTCTTTCCCATTCAGAGAGCTGTGCTGGAACCTGCGATGAAAGGGCAGGATATGGTCGGTCGAGCTAGAACAGGAACTGGGAAGACTCTTGCTTTTGGGATACCCATCTTGGATAAGATTATTCAATCTAATGCTAAGCATGGGCAAGGAAGGGACCCTTTGGCTTTGGTTTTGGCACCAACCAGAGAACTTGCGCGACAGGTTGAAAATGAGTTCAAGGATGCCGCACCTAACTTGAGCACAATCTGTCTTTATGGGGGTACGCCCATCAGCAATCAAATGAGGGAGCTTGATTATGGTGTAGATATTGCAGTTGGCACGCCTGGTCGAATTATTGATCTTCTTAACCGAGGTTCATTGAATTTGAATGCTGTTCAGTTTGTTGTTCTCGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGACGTGGAGAAGATCTTGTCGAGGTTGCCTCCACAACGTCAGACTCTCATGTTCTCAGCGACAATGCCACCTGAGATAAAGAATATCATCCGCAATTACCTAAACAGCCCCCTAACCATTGATCTTGTTGGAGATTCTAATCAGAAATTGGCAGATGGAATTTCGCTGTACTCTATTGCATCCAGTGCATATACTAAAGCGGGAATTCTTGCGCCCCTGATAACAGAACATGCAAATGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGATTATCATATATGATGTCAAAAAGCCTTAAATGCGAGGCCTTGCATGGAGATATTTCGCAAGCACAGAGGGAAAGAACTCTTGCTGGCTTCAGAAACAACTACTTTAATGTTCTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATTCCAAATGTTGATCTTGTAATACATTATGATCCTCCGAATAATTCTGAGATATTTGTTCATCGATCTGGACGAACTGGGCGGGCTGGTAAGAAAGGAGCTGCTATTCTTGTTTATACAGAAGTTCAGTCCAGGGCTATAAGTACTATTGAGCGTGATGTTGGATGTAAATTTACCGAGCTACCAAAGATTGATGTTCCAAGTGGATCTGTAGACATGTTAAGTGGCATGGGTGGTGGTCGATTCGGCCCTTCAGGAGGTATGAGGTCTGGTGGTCCAGGTTATGGTGGTGGTTCTGGATTTAGCCGTTCTGGAAGTTATAGTAACCCTGGATTTAGCCGACCTGGCTATGGAAATTCAGGTGGGACGGGAAGATCTGGTGGTAGTGGTACAGGCTTTGGTGGCAGTTCTGGATTTGACCGCTCTGGGAGTTCTAGTAACCCTGGATTTAACCGAACTGGTTATGGGAATTCAGGTAACACGGGAAGATTTGGGGGATTTTCTGATAACTCTTCTGCTAAACCAACATTTGGTGGACCTAGCTCTGGTAGTTATGGTTCAAGCCAAAATCGCTACAGTGGTTTTGGTACTTTTGATGACTGA 1815 0.4727 MTTTILRRSSSIFSRRFFAAFTSVEALHLHHRRSLIAAVTRINGLSDLGARAFHAKPGLLNFHSSLVSPSAQPALDHDYAHENDGFTANSSDEGLEIAKLGISQEIVDALAKKGIAKLFPIQRAVLEPAMKGQDMVGRARTGTGKTLAFGIPILDKIIQSNAKHGQGRDPLALVLAPTRELARQVENEFKDAAPNLSTICLYGGTPISNQMRELDYGVDIAVGTPGRIIDLLNRGSLNLNAVQFVVLDEADQMLQVGFQEDVEKILSRLPPQRQTLMFSATMPPEIKNIIRNYLNSPLTIDLVGDSNQKLADGISLYSIASSAYTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYMMSKSLKCEALHGDISQAQRERTLAGFRNNYFNVLVATDVASRGLDIPNVDLVIHYDPPNNSEIFVHRSGRTGRAGKKGAAILVYTEVQSRAISTIERDVGCKFTELPKIDVPSGSVDMLSGMGGGRFGPSGGMRSGGPGYGGGSGFSRSGSYSNPGFSRPGYGNSGGTGRSGGSGTGFGGSSGFDRSGSSSNPGFNRTGYGNSGNTGRFGGFSDNSSAKPTFGGPSSGSYGSSQNRYSGFGTFDD* 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1579 604 MobiDBLite consensus disorder prediction 505 604 - -
Lja6g1579 604 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 478 IPR001650 -
Lja6g1579 604 CDD SF2_C_DEAD 326 443 - -
Lja6g1579 604 SMART ultradead3 114 317 IPR014001 -
Lja6g1579 604 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 3 558 - -
Lja6g1579 604 PANTHER RNA HELICASE 3 558 - -
Lja6g1579 604 MobiDBLite consensus disorder prediction 474 604 - -
Lja6g1579 604 Pfam DEAD/DEAH box helicase 119 288 IPR011545 GO:0003676|GO:0005524
Lja6g1579 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 446 IPR027417 -
Lja6g1579 604 Pfam Helicase conserved C-terminal domain 329 434 IPR001650 -
Lja6g1579 604 SMART helicmild6 354 434 IPR001650 -
Lja6g1579 604 Gene3D - 318 475 IPR027417 -
Lja6g1579 604 Gene3D - 96 304 IPR027417 -
Lja6g1579 604 CDD DEADc 106 301 - -
Lja6g1579 604 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 126 300 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1579 Lja-Chr6 42449733 42456959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1579 80 466 Eukaryotic Initiation Factors Gene Family AT3G19760 32.152 3.58e-64 214