Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1578 ATGACACACCCAACAACACTACCTTCTCCATCTACCTTCACCTGTGATTGGACTTATGATGTCTTCCTCAACTTCAGAGGCAGCGAAACCCGCCACGGTTTCACAGGCAATCTCTACAATTCTCTGCACCAAAAGGGTATACATACCTTCATAGATGATGAAAGGCTAAACAAAGGAGAAGAAATCACACCATCCCTTCTCCATGCCATTAAAGAGTCTAGGATTTTCATTTCTGTTTTCTCTGAGAACTATGCATCCTCAACTCATTGCTTGGATGAACTTGTTATGATCATGGACTGCTCCAAGGCACAAGGACGGTTGTTTTTGCCGGTGTTTTATGGTGTGGATCCTTCACAAGTTCGCCACCAAAGTGGGGCTTACAAAGATGCTTTGGCAAAACATAAGGAGAGGTTTCAAGATGACAAGGGAAAGGTTCAAAAATGGAGGGATGCTTTATGTCAAGCTGCTAATGTGTCTGGTTGGCACTTCCAACAAGGGTCTCAATCAGAATACAAGTTTATTGGAAAGATTGTGGAAGAGGTCTCAGAAAAGATTAATCGCACTCCTTTACATGTTGCTGATAAACCGGTTGCGCTGGAGTCTCCGGTGCTAGCAGTGGTGTCTTCTCTCCTAGGACTTGGCTCTGATGAGGAGGTCAACATGGTTGGCATTCATGGAATAGGTGGAATCGGTAAATCGACAATTGCTCGTGCGGTTTACAACATGATTGCTGATCAGTTTGAAGGTTTGTGTTTTCTTGCAGACATAAGACAAAGGGCTATTAATCATGGTCTTGCACAACTTCAAGAGACACTACTTTCTGAAGTATTGGGGGAGAAGGATATCAAAGTGGGAGATGTTTACAGAGGAATATCAATGATAAAAAAGAGGCTTCATCGAAAGAAGGTTCTTATGATTCTTGATGATGTTGACAACCAGAAGCAGTTACAAGCACTTGCTGGACATGATTGGTTTGGCTCTGACAGCAAGATCATAATCACAACAAGAAACAAGCATTTGCTGGCCACTCATGGGGTAGTGAAATTATATGAGGTGAAACAATTAAATGATGAAACAGCACTTGAGTTGTTCAATTGGCATACCTTCAAACATAAAGAAATTTCTCCAGATTATGCTGATATTTCAAAACGAGCAGTTTCTTATGCTCAAGGCCTTCCATTGGCTTTGGAGGTGATAGGCTCTTACTTGTTTGGCAAAAGTTTAAGTGTATGGAAATCTGCACTGGATAAATATGAAACGATTCTTCACAAAGACATCCATGAAATACTTAAAAAGGGCATTTTTCTTGACATAGCTTGTTTCTTCAACTCTTACCAAATGGGATATATCAAAGAAATACTGAACTTACATGGTTTCAATGCGGAAAATGGAATGCAAGTGCTGAATGACAAATCTCTCATAAAAATTGATGGAAGTGGTTGTGTAAAAATGCATGACTTAATTCAAGACATGGGCAGAGAAATCGTAAGGCTGGAATCAACAATGGAGCCTGGAAAACGCAGTAGATTATGGCTTACCGAGGACATAGTTCATGTTTTGGAAGAAAATACGGGGACTGATACAGTTGAAGTTGTGGTCATCAACCTATGCAAAGACAAAGAAGTAGGCCCTCAAAATCTACCAAATAGTCTTAGAGTTTTAGACTGGAGTGCATATCCATCACTATCTTTACCAGCTGATTTTAATCCCAAGAATCTTGTGATACTTAGCCTCCCTGAAAGCTGCAAATTCTTAACTGAACTACCTAACTTGTCTGGGCTACCAAATTTGGGGGCATTGTGTCTTGACTATTGTTCTAATTTAATTAAGATTCATGGCTCAGTGGGGTTTCTTAATAGACTCATGTTATTGAGTGCTCAAGGATGCACCCAACTAGAAATGTTGGTGCCCTTCATCAATTTGCCATCTCTAGAGACTCTGGATTTGAGAGGCTGCTCGCGTCTTAAGAGCTTCCCAGAAGTATTGGGAGTGATGGAGAACATTGAAGATGTTTATTTAGACCAGACTGCCATAGATAAATTGCCATGCTCAATTGGAAATCTTGTTGGACTCCGACGATTGTTCTTGAGGGAATGCAAGAATCTAATTCAGTTACCAAGCAATGTCCATACATTGCCTAAACTTGAGGTAATAATGAGTTATGATTGTGGGGGATTTCAGTTGTTCGAGGGTGAAGAAAAAGTAAGCACACAGGTATTTTCAAAATCAATGCTTGTTTATAATGAAGGCAAAGAGGTGTTACTTGATGTATATTCTCTTAACATGTCTCATAATAATTTCATAGAATTACGAAGACCTTTGTGGAGTCCCCATGGACCTGCGGGTAGTGTTCTTGGATTCATGATTAAAGGGATTCTAGATGGGACCGTAAATTTGTATGGACTCAGAAGCAAGGAATCATCCATGTGTTTCTGGTTCATAAAGAAATTTCCCGATATAGCTCTATGTTGTGCTGGAGAGCCAAGTGTGTATAAAGACAATATGATATTGGATTTCAAGTTCAGTGTACTCATCAATGGCACCAAGCAGTTAAGTTCTTCATGTAACTACATATTTTCTGCAGAAAGAATGACAGAACAAATGTTTTTGTGTGATCTGTTATGCAAAAAGGAGACAGCATTTCCAGAACATGAATGGAATCAAGTAGAGATTTTATGTGAGTTGAAGTACCCCATGCCATGTGGCTCTGAAAGGGTAATGGGTGCCGAAGACAGGACCACAATGGGAGTTCCAAGTTGGTCCCTCATTTATGTCTTTGAAGAATACAAGGAGGATTTCAAATTTATGTATGAGTTTCAGGAATGTAAAGAGATGCAGAGGAGAAAGGACACACTATTCGGCTTTCACTCCATGCTCAAGCGTCGCGGATTAAATTGGATTGGGTTTTGA 2910 0.401 MTHPTTLPSPSTFTCDWTYDVFLNFRGSETRHGFTGNLYNSLHQKGIHTFIDDERLNKGEEITPSLLHAIKESRIFISVFSENYASSTHCLDELVMIMDCSKAQGRLFLPVFYGVDPSQVRHQSGAYKDALAKHKERFQDDKGKVQKWRDALCQAANVSGWHFQQGSQSEYKFIGKIVEEVSEKINRTPLHVADKPVALESPVLAVVSSLLGLGSDEEVNMVGIHGIGGIGKSTIARAVYNMIADQFEGLCFLADIRQRAINHGLAQLQETLLSEVLGEKDIKVGDVYRGISMIKKRLHRKKVLMILDDVDNQKQLQALAGHDWFGSDSKIIITTRNKHLLATHGVVKLYEVKQLNDETALELFNWHTFKHKEISPDYADISKRAVSYAQGLPLALEVIGSYLFGKSLSVWKSALDKYETILHKDIHEILKKGIFLDIACFFNSYQMGYIKEILNLHGFNAENGMQVLNDKSLIKIDGSGCVKMHDLIQDMGREIVRLESTMEPGKRSRLWLTEDIVHVLEENTGTDTVEVVVINLCKDKEVGPQNLPNSLRVLDWSAYPSLSLPADFNPKNLVILSLPESCKFLTELPNLSGLPNLGALCLDYCSNLIKIHGSVGFLNRLMLLSAQGCTQLEMLVPFINLPSLETLDLRGCSRLKSFPEVLGVMENIEDVYLDQTAIDKLPCSIGNLVGLRRLFLRECKNLIQLPSNVHTLPKLEVIMSYDCGGFQLFEGEEKVSTQVFSKSMLVYNEGKEVLLDVYSLNMSHNNFIELRRPLWSPHGPAGSVLGFMIKGILDGTVNLYGLRSKESSMCFWFIKKFPDIALCCAGEPSVYKDNMILDFKFSVLINGTKQLSSSCNYIFSAERMTEQMFLCDLLCKKETAFPEHEWNQVEILCELKYPMPCGSERVMGAEDRTTMGVPSWSLIYVFEEYKEDFKFMYEFQECKEMQRRKDTLFGFHSMLKRRGLNWIGF* 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1578 969 Pfam NB-ARC domain 214 424 IPR002182 GO:0043531
Lja6g1578 969 Pfam TIR domain 19 189 IPR000157 GO:0007165
Lja6g1578 969 SUPERFAMILY "Winged helix" DNA-binding domain 429 521 IPR036390 -
Lja6g1578 969 PANTHER ARCHAEAL ATPASE 29 748 - -
Lja6g1578 969 ProSiteProfiles TIR domain profile. 17 185 IPR000157 GO:0007165
Lja6g1578 969 Gene3D Ribonuclease Inhibitor 512 773 IPR032675 -
Lja6g1578 969 PRINTS Disease resistance protein signature 297 311 - -
Lja6g1578 969 PRINTS Disease resistance protein signature 639 655 - -
Lja6g1578 969 PRINTS Disease resistance protein signature 221 236 - -
Lja6g1578 969 PRINTS Disease resistance protein signature 389 403 - -
Lja6g1578 969 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 29 748 IPR044974 GO:0006952
Lja6g1578 969 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Lja6g1578 969 SMART till_3 18 158 IPR000157 GO:0007165
Lja6g1578 969 Gene3D - 354 433 IPR042197 -
Lja6g1578 969 Gene3D - 186 348 IPR027417 -
Lja6g1578 969 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 431 IPR027417 -
Lja6g1578 969 Gene3D - 15 185 IPR035897 -
Lja6g1578 969 SUPERFAMILY L domain-like 525 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1578 Lja-Chr6 42445447 42449251 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1578 8 729 WRKY Transcription Factor Family AT4G12020 30.884 3.02e-83 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1578 - - lja:Lj6g3v0936950.1 1355.12