Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1577 ATGGAACACCCAACAATACTACCTTCTCCATCTTCCTTCACCTGTGATTGGACTTATGATGTCTTCCTCAACTTCAGAGGCATCGACACACGCCACGGTTTCACTGGCAATATCTACAATTCTCTGCACCAAAAGGGTATCCACACCTTCATTGATGATGAAAGGCTCAACAAAGGAGAAGAAATCACACCAGCTCTTCTCCATGCTATCAAAGAGTCCAGGATTTTCATTTCTGTTTTCTCTGAGAACTATGCCTCCTCGACGCATTGCTTGGATGAACTTGTCATGATCCTTGAGTGTTCCAAGGCGCAAGGACGGTTGTTTTGGCCGGTTTTTTTTGGTGTGGATCCTTCACAAGTTCGCCACCAAAGTGGGGCTTATAAAGATGCTTTGGCAAAACATGAGGAGAGGTTTCAAGATGACAAGGGAAAGGTTCAAAAATGGAAGGATGCTTTATGTCAAGCTGCAAATGTGTCTGGCTGGCACTTCCAACAAGGGTCTCAATCAGAATACATGTTTATTGGAAAGATTGTGGAAGAGGTCTCTGAAAAGATTAATCGCACTCCTTTACATGTTGCTTATAAGCCGGTTGGGCTGGAGTCTCCGGTGCTAGCAGTGGTGTCTTCTCTCCTAGGACTTGGGTCTGATGAGGAGGTCAACATGGTTGGCATTCATGGAATAGGTGGAATCGGTAAATCGACAATTGCTCGTGCGGTTTACAACATGATTGCTGATCAGTTTGAAGGTTTGTGTTTTCTTGCAGACATAAGACAAAGGGCTATTAATCATGGTCTTGCACAACTCCAAGAGACACTACTTTCTGAAGTATTGGGGGAGAAGGATTTCAAAGTGGGAGATGTTTACAGAGGAATGTCAATAATAAAAAAGAGGCTTCATCGAAAGAAGATTCTTTTGATTCTTGATGATGTTGACAGCCAGAAGCAGTTACAAGCACTTTCTGGACATGATTGGTTTGGCTCTGGCAGCAAGATCATAATCACAACAAGAAACAAGCATCTGCTGGCTACTCATGGGGTAGTGAAATTATATGAGGTGAAACAATTAAATGATGAAACAGCACTTGAATTGTTCAATTGGCATGCCTTCAAACATAAAGAAATTTCTCCAGATTATGCTGATATTTCAAAACGAGCAGTTTCTTATGCTCAAGGCCTTCCATTGGCTTTGGAGGTGATAGGCTCTTACTTGTTTGGCAAAAGTTTAAGTGTATGGAAATCTGCACTGGATAAGTATGAAACAATTCTTCACAAAGACATCCATGAAATACTTAAAGTTAGCTATGATGATTTGGAGGAAGATGAGAAGGGCATTTTTCTTGACATAGCTTGTTTCTTCAACTCTTACCAAATGGGATATGTCAAAGAAATACTATACTTACATGGTTTCAATGCGGAAAATGGAATGCAAGTGCTGAATGACAAATCTCTCATAAAAATTGATGGAAGTGGTTGTGTAAAAATGCATGACTTAATTCAAGACATGGGCAGAGAAATCGTAAGGCTGGAATCAACAATGGAGCCTGGAAAACGCAGTAGATTATGGCTTACCGAGGACATAGTTCATGTTTTGGAAGAAAATACGGGGACTGATACAGTTGAAGTTATGGTCATCAACCTATGCAAAGACAAAGAAGTGCAGTGGAATGGAAAAGCCTTCAAGAAAATGAAAAATCTAAGAATTCTCATTGTTACAAATGCATGTTTCTCTAGAGGCCCTCAAAATCTACCAAATAGTCTTAGAGTTTTAGACTGGAGTGCATATCCATCACTATCTTTACCAGCTGATTTCAATCCCAAGAATCTTGTGATACTTAGCCTCCCTGAAAGTTGTCTTCAGTCGTTCAAATCATCCAAGGTGTTTGAGTCCTTGAACTTTATGGATTTTGATGGGTGCAAATTCTTAACTGAACTACCTAACTTGACTGGGCTACCAAATTTGGGGGCATTGTGTCTTGACAATTGTTCTAATTTAATTAAGATTCATGGCTCAGTGGGGTTTCTTAATAAACTCATGTTATTGAGTGTTCAAGGATGCACCCAGCTAGAAATGTTGGTGCCCTTCATCAATTTGCCATCTCTAGAGACTCTGGATTTGAGAGGCTGCTCGCGTCTTAAGAGCTTCCCAAAAGTGTTGGGAGTGATGGAGAACACTGAAGATGTTTATTTAGACCAGACTGCCATAGATAAATTGCCATGCTCAATTGGAAATCTTGTTGGACTCCGACGATTGTTCTTGAGGGAATGGAAGAATCTAATTCAGTTACCAAACAGTGTCCATGCATTGCCTAAACTTGAGGTAATAATGAGTTATGATTGTGGGGGATTTCAGTTGTTCCAGGCTGAAGAAAAAGTGAGCACACAGGTATTTTCAAAATCAATGCTTGTTTATAATGAAGGCAAAGGAGTGTTACTTGATGTATATTCTCTTAACATGTCTCCTAATAATGTCATAGAATTACGTAGACCATTGTGGAGTCCCCATGGACCTGTGGGTAGTGATCTTGGATTCATGATTAAAGGGGTTCTAGAAGGGACTGTAAATTGGCATGGACTCAGAAGCAAAGAATCATCCATGTGTTTCTGGTTCAGAAAGAAATTCCCCCATATAAGTCTATGTTGTGCTGGAGAGCCGTGTGTGTATAAAGACAATATGATATTGGATTTCAAGTTCAGTGTACTCATCAATGGCACCAAGCACTTAAGTTCTTCATGTAACTACATATTTTCTGCAGAAAGAATGACAGAACAAATGCTTTTGTGTGATCTGTTATGCAAAGAGGAGACAGCATTTTCAGAACATGAATGGAATCAAGTAGAGATTTTATGTGAGTTGAAGTACCCCATGCCATGTGGCTCTGAACGGGTAATGGGTGCCCAAGACAGGACTACAATGGGAATTCCAAGTTGGTCCCTCATTTATGTCTATGAAGAATACAAGGAGGATGTCAAATTTATGCCTGAGTTTCAGGAATGTAAAGAGATGCAGAGGAGAAAGGACACACTATTTGGCTTTCACTCCATGCTCAAGCGTCACGGATTAAATTGGATTGGCTTTTGA 3078 0.4032 MEHPTILPSPSSFTCDWTYDVFLNFRGIDTRHGFTGNIYNSLHQKGIHTFIDDERLNKGEEITPALLHAIKESRIFISVFSENYASSTHCLDELVMILECSKAQGRLFWPVFFGVDPSQVRHQSGAYKDALAKHEERFQDDKGKVQKWKDALCQAANVSGWHFQQGSQSEYMFIGKIVEEVSEKINRTPLHVAYKPVGLESPVLAVVSSLLGLGSDEEVNMVGIHGIGGIGKSTIARAVYNMIADQFEGLCFLADIRQRAINHGLAQLQETLLSEVLGEKDFKVGDVYRGMSIIKKRLHRKKILLILDDVDSQKQLQALSGHDWFGSGSKIIITTRNKHLLATHGVVKLYEVKQLNDETALELFNWHAFKHKEISPDYADISKRAVSYAQGLPLALEVIGSYLFGKSLSVWKSALDKYETILHKDIHEILKVSYDDLEEDEKGIFLDIACFFNSYQMGYVKEILYLHGFNAENGMQVLNDKSLIKIDGSGCVKMHDLIQDMGREIVRLESTMEPGKRSRLWLTEDIVHVLEENTGTDTVEVMVINLCKDKEVQWNGKAFKKMKNLRILIVTNACFSRGPQNLPNSLRVLDWSAYPSLSLPADFNPKNLVILSLPESCLQSFKSSKVFESLNFMDFDGCKFLTELPNLTGLPNLGALCLDNCSNLIKIHGSVGFLNKLMLLSVQGCTQLEMLVPFINLPSLETLDLRGCSRLKSFPKVLGVMENTEDVYLDQTAIDKLPCSIGNLVGLRRLFLREWKNLIQLPNSVHALPKLEVIMSYDCGGFQLFQAEEKVSTQVFSKSMLVYNEGKGVLLDVYSLNMSPNNVIELRRPLWSPHGPVGSDLGFMIKGVLEGTVNWHGLRSKESSMCFWFRKKFPHISLCCAGEPCVYKDNMILDFKFSVLINGTKHLSSSCNYIFSAERMTEQMLLCDLLCKEETAFSEHEWNQVEILCELKYPMPCGSERVMGAQDRTTMGIPSWSLIYVYEEYKEDVKFMPEFQECKEMQRRKDTLFGFHSMLKRHGLNWIGF* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1577 1025 Gene3D - 354 438 IPR042197 -
Lja6g1577 1025 ProSiteProfiles TIR domain profile. 17 185 IPR000157 GO:0007165
Lja6g1577 1025 Gene3D - 14 190 IPR035897 -
Lja6g1577 1025 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 718 - -
Lja6g1577 1025 Pfam TIR domain 19 188 IPR000157 GO:0007165
Lja6g1577 1025 Gene3D - 191 349 IPR027417 -
Lja6g1577 1025 SMART till_3 18 158 IPR000157 GO:0007165
Lja6g1577 1025 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Lja6g1577 1025 SUPERFAMILY L domain-like 541 787 - -
Lja6g1577 1025 Gene3D Ribonuclease Inhibitor 531 824 IPR032675 -
Lja6g1577 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 448 IPR027417 -
Lja6g1577 1025 Pfam NB-ARC domain 214 435 IPR002182 GO:0043531
Lja6g1577 1025 PRINTS Disease resistance protein signature 221 236 - -
Lja6g1577 1025 PRINTS Disease resistance protein signature 389 403 - -
Lja6g1577 1025 PRINTS Disease resistance protein signature 695 711 - -
Lja6g1577 1025 PRINTS Disease resistance protein signature 297 311 - -
Lja6g1577 1025 SUPERFAMILY "Winged helix" DNA-binding domain 425 531 IPR036390 -
Lja6g1577 1025 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 718 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1577 Lja-Chr6 42432322 42436674 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1577 8 785 WRKY Transcription Factor Family AT4G12020 32.178 1.00e-95 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1577 - - lja:Lj6g3v0936950.1 1583.16