Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1569 ATGAACAACAGTGCTCCTGATTGGAATTTTGGGAGTGATACCTGTCTCACCAACCAAAAGAAACCCATAGGGATGGACAATGATCTTGTGGAGATCCTTTGGCAAAATGGCCAGCTAGTATTGCAGAGCCAAGCACATAAGAAATCAGTTGTGAATTCTATCGCCTCAAGACAGGTTAACAAAAAATTTCAACCAACATTGAGGACTAGTGATCCATTTGGGATGATCCAAGATGATGAGACAATCTCATGGATCCAATACCCTCCGGACCATTCGCTGGAACAAGAATTATGTTCAGAACTTTTATCTGAACTGCCTCTCTGTGAAGTTGAGTCTTACAGGCAAATCAGGCAATTTGGAGATGCAAAGTTTTCCAAATTGGATGATTCCAGTATGAAACCCTCCTGTGTTCAGGAATTCTCAGGAATTCCTATGCCTGCTCCAAAATTTCATGCTTCTGATTCATATCAGAAAAACAAGGTCCAAAACTTTCCCCACTTTTCAGCACTCCCTATTGTTTCTACAGCATCTGCTAATGCACATTTGAGAGACAAAATTGCTGGTAATAATGTGTCAAAAGGTGAGATTAGAGAGTGCTCAGTGATGACGGTTGGTTCGAGTCACTGCGGAAGCAATCACATCCCTCAAGATCCTGATATAAGCAGGGCTTCAAGCAATGGTGCTTGGACTACTACTTTATCTGCTGAGCCTGAAGCTGGTAGAGATGATGTCCATAGAACAATTCCGCAGTGTGAGAAAGGAAAACCGGAGATGCTTGAACCAACTATGACTTCATCTTCAGGGGGCTCAGGCGGTAGTAGTCTTGGAAAAACTTGTTCCCTATCTACAAGAAGCCAGGGCGAAAAAAGGAAAGGGATTGATGTGGAAGAACAAAGTGAGGACACAGAACTCAAATCAGCTGTTGGAAATAAAGCATCTCGGCGAGCAGCGTCAGCGCGAAGGAACCGTGCTGCTGAAGTGCATAATTTGTCAGAAAGGAGAAGAAGAGATAGGATTAATGAGAAGATGAGGGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGATAAAGCATCAATGCTAGAAGAGGCGATCGAATACTTGAAATCACTTCAGTTACAGCTTCAGGTAATGTGGATGGGAACTGGCATGACACCAATGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGGGAATGGGAATGGCTACACCTCCTTTTCCTCCAATTCACAACCCAATGCAGTTACCAAGAGGGCCACTCGATCAATCCATAGCAGCATCTCAGACCCCAAACCAGTCATTAATGTCCCCAAATCCTATTTTGGGTGCCTTTAACTACCAGAATCAGATGCAAAATCCAGCAATTTCAGAGCAATATGCGCGTTACATGGGCTATCATCTTATGCAAAATGCCTCTCAGCCAATGAATATGTATAGATATGGTCCCCAGTCAGTGCAACACAGCCAAACAATGATTCCACCCAGCAATAGCAGTGGATCCATGAGTGGAGCAGCTAGCATTGATGATCCTGTGAGTGGAAAAATTGGTGCATGTCACCATGTGGAACGCTGA 1581 0.4364 MNNSAPDWNFGSDTCLTNQKKPIGMDNDLVEILWQNGQLVLQSQAHKKSVVNSIASRQVNKKFQPTLRTSDPFGMIQDDETISWIQYPPDHSLEQELCSELLSELPLCEVESYRQIRQFGDAKFSKLDDSSMKPSCVQEFSGIPMPAPKFHASDSYQKNKVQNFPHFSALPIVSTASANAHLRDKIAGNNVSKGEIRECSVMTVGSSHCGSNHIPQDPDISRASSNGAWTTTLSAEPEAGRDDVHRTIPQCEKGKPEMLEPTMTSSSGGSGGSSLGKTCSLSTRSQGEKRKGIDVEEQSEDTELKSAVGNKASRRAASARRNRAAEVHNLSERRRRDRINEKMRALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGTGMTPMMFPGIQHYMSQMGMGMATPPFPPIHNPMQLPRGPLDQSIAASQTPNQSLMSPNPILGAFNYQNQMQNPAISEQYARYMGYHLMQNASQPMNMYRYGPQSVQHSQTMIPPSNSSGSMSGAASIDDPVSGKIGACHHVER* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1569 526 MobiDBLite consensus disorder prediction 319 334 - -
Lja6g1569 526 Gene3D - 318 379 IPR036638 GO:0046983
Lja6g1569 526 MobiDBLite consensus disorder prediction 489 508 - -
Lja6g1569 526 Pfam Helix-loop-helix DNA-binding domain 327 373 IPR011598 GO:0046983
Lja6g1569 526 MobiDBLite consensus disorder prediction 253 334 - -
Lja6g1569 526 MobiDBLite consensus disorder prediction 287 308 - -
Lja6g1569 526 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 323 372 IPR011598 GO:0046983
Lja6g1569 526 MobiDBLite consensus disorder prediction 489 516 - -
Lja6g1569 526 SMART finulus 329 378 IPR011598 GO:0046983
Lja6g1569 526 MobiDBLite consensus disorder prediction 260 286 - -
Lja6g1569 526 CDD bHLH_AtPIF_like 326 386 - -
Lja6g1569 526 PANTHER TRANSCRIPTION FACTOR PIF5 4 501 - -
Lja6g1569 526 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 321 389 IPR036638 GO:0046983
Lja6g1569 526 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 4 501 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1569 Lja-Chr6 42230538 42235672 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1569 8 503 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 34.496 5.28e-58 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja6g1569 HLH 4.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1569 K16189 - gmx:100784531 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1569 6 42230538 42235672 Lja6g1569 6 42230538 42235672 ECH