Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1559 ATGAAGAATTGTAGTACGAGAAATGGTGGCGACACAAGGAAATACCACAAATCGGAGCAACCACGCCTGAGGTGGACACTTGATCTCCATGAACACTTTGTTGAAGCTGTGGAAAGTCTAGGGGGAAAACAAAAGGCAACTCCAAAGCGCATTTTGCAGCTAATGAATAATGTCAAAGGACTCAGGATCTCTCACATTAAAAGCCATCTTCAGATGTACAGAAACGTGAAGGGTCGACGACACACGATGTATGAGTTGCAGAAAGAAAATGCACAAGTTAGCGACCTTCCAATCTGCTCCAGATCATCACTAAGAACAAAATTAAGTGTATCAAAATATGAAACTGATTATGATCTGAATCAGGAGCCCGAGTCAAGTGCATGCTTACTTAGTGACATTTCAAATGATGAAGAAGAAAGTAGTCGGACAATGAAATTTCTAGATGAACGAATGATGCATAGTGATCATGAACGAATGCATACAGAAGATAACCATGTAGTTGATTCTAGTTCTGTACAAACTCATGGGAGCAATAGTATAAATTTAGACCTAGCAATTTGA 561 0.3957 MKNCSTRNGGDTRKYHKSEQPRLRWTLDLHEHFVEAVESLGGKQKATPKRILQLMNNVKGLRISHIKSHLQMYRNVKGRRHTMYELQKENAQVSDLPICSRSSLRTKLSVSKYETDYDLNQEPESSACLLSDISNDEEESSRTMKFLDERMMHSDHERMHTEDNHVVDSSSVQTHGSNSINLDLAI* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1559 186 Gene3D - 20 78 - -
Lja6g1559 186 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 9 163 - -
Lja6g1559 186 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 21 75 IPR006447 GO:0003677
Lja6g1559 186 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 9 163 IPR044848 GO:0003700
Lja6g1559 186 SUPERFAMILY Homeodomain-like 19 75 IPR009057 -
Lja6g1559 186 MobiDBLite consensus disorder prediction 163 186 - -
Lja6g1559 186 MobiDBLite consensus disorder prediction 166 181 - -
Lja6g1559 186 Pfam Myb-like DNA-binding domain 23 74 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1559 Lja-Chr6 42146172 42149728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1559 11 77 G2-like Transcription Factor Family AT2G42660 59.701 4.59e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja6g1559 Myb_DNA-binding 5.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1559 - - lja:Lj0g3v0205019.1 377.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1559 6 42146172 42149728 Lja6g1559 6 42146172 42149728 ECH