Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1557 ATGCACCATTTTCTGATTGCTAGATTATCTTCCACGATCCCCCACTTTGGTATTCCATGCCACAATGCATTTCCACTTTTCTTCACTTCTCGTGCATTATCTATATCCACCACAAACCGCCGCAAAGGTGGTGGAACCTTTACGGTTTCAAGCCTCATCAACTCATCTGGGTTGCCCCCAGAAACAGCCCTCAAACTCTCCAAGAGGCTGCAAGTGAAATACCCAGATGGGCCAAATGCTGTGGTTGAGCTTCTAAAGAATCATGGCTTCTCTGATACCCAGCTTTCTAGCCTTGTCAAGAAGCTCCCAAAAGTGCTTTTAGCTAAACCTGGGAAGACCCTTTTGCCAAAACTCAATTTCTTCCTTTCCATTGGGGTTTCAACCACTGACCTCCCCAAGATTCTCATTGGGAATACCTCATTCTTGACAACTAGCTTGGAGAAGAACACTATCCCGCGGTATAATATCATTAGGAGCCTTGTTCGAAGCGATAAGGAGGCGATTTCAACTTTGAAGAATGGGTTGTGGAGCTTCCACATTGGTAGTGTGAGGAATGATGCAGTTCGTAATATTGAGGTTTTGAGGCAGCTTGGCCTGCCTCAAGGCTCCATTTCCCTGCTGGTAACCAATTTTCCGAGTGTAGCCTTCACGAAGCATTCAAGATTTGTTGAGGCTGTTAAGACAGTGAAGGAAATTGGGTTTGATCCTCTGAAGACGAATTTTGTTTTGGCGCTCGAAGTAGTTGCAAAGATTGATAAAGCAACATGGAAGTCGAAATTAAAGGTTTTTGAGAGCTGGGGCTGGTCCTCAGATATCTGTCTATCGGCTTTCAAAAGGTATCCTCAGTATATGTTGATGTCAGAAAAGAAGATTTTGAAGATAATGAGCTTCTTGATGAAGGAAGGTTTTGCCCCAGAAGATATTGCTAGAAGCCCTGGAATTCTGATCCGCAGCTTGGAGAAGACACTTGCTCCTAGATGTGCAGTTGTTAAAATTTTGAAGTCTAGGGGTTTGGTCAAGAGTGATTTGCGCATAAGCAGCTATATAACTATTAATGAGAAAATGTTTTTGGAGAGATATGTGACCCGGTTTAAGAAAGATGTGCCGCAACTTTTGGATGCATTTAAAGGTCAGAAGTCAGGTTGA 1146 0.4337 MHHFLIARLSSTIPHFGIPCHNAFPLFFTSRALSISTTNRRKGGGTFTVSSLINSSGLPPETALKLSKRLQVKYPDGPNAVVELLKNHGFSDTQLSSLVKKLPKVLLAKPGKTLLPKLNFFLSIGVSTTDLPKILIGNTSFLTTSLEKNTIPRYNIIRSLVRSDKEAISTLKNGLWSFHIGSVRNDAVRNIEVLRQLGLPQGSISLLVTNFPSVAFTKHSRFVEAVKTVKEIGFDPLKTNFVLALEVVAKIDKATWKSKLKVFESWGWSSDICLSAFKRYPQYMLMSEKKILKIMSFLMKEGFAPEDIARSPGILIRSLEKTLAPRCAVVKILKSRGLVKSDLRISSYITINEKMFLERYVTRFKKDVPQLLDAFKGQKSG* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1557 381 Pfam mTERF 83 309 IPR003690 GO:0003690|GO:0006355
Lja6g1557 381 Pfam mTERF 256 356 IPR003690 GO:0003690|GO:0006355
Lja6g1557 381 Gene3D Transcription termination factor 3, mitochondrial 61 183 IPR038538 -
Lja6g1557 381 Gene3D Transcription termination factor 3, mitochondrial 184 368 IPR038538 -
Lja6g1557 381 PANTHER CGI-12 PROTEIN-RELATED 27 378 IPR003690 GO:0003690|GO:0006355
Lja6g1557 381 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 27 378 - -
Lja6g1557 381 SMART mt_12 205 235 IPR003690 GO:0003690|GO:0006355
Lja6g1557 381 SMART mt_12 274 304 IPR003690 GO:0003690|GO:0006355
Lja6g1557 381 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Lja6g1557 381 SMART mt_12 305 339 IPR003690 GO:0003690|GO:0006355
Lja6g1557 381 SMART mt_12 96 127 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1557 Lja-Chr6 42134970 42136466 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja6g1557 mTERF 3.8e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1557 K15032 - gmx:106799612 459.529