Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1556 ATGGTGCCTAATTCCCTCATTGCAAGGTTAACTTCATCATTCTCATACTACAAGTGTAGCAGAATCCAATTGAGTTCTGTGTTTCATCACAATGCTTTCCCTTTTTCCTTCAATTCATTCAGTTCATGCACCTCATCATCTGACTCTGAATCAGATGCAGACTACTGCAAAGGTGACACCTATACGATTTCTTACCTAACCAAATCATGTGGGTTGTCTCCAGATTCAGCCAAGAAGCTCTCTATAGGGTTGAACTTGAAAGACCCAGATGGCCCAAATGCTGTTCTTGATCTTCTCAAAAACTATGGCTTCTCCAAAACCCAGGTTGCAAAGCTTGTAGGGAAACACCCCTTGTTGCTTTTTGCTAATGCTAAGAGAACCCTTTTGCCTAAGCTCAAGTTCCTGCATTCTATTGGGGTTTCCACCACTGATATGCCACAGGTTCTCCTTGCTAACCATATTTTGTTGGTCAGGAGTTTGAAGAACTGTATCGTTCCGCGGTATAAGATTCTCAGGGGTGTTCTCCGTAATGATCAGGAAGCTGCTAGAGCTTTGAGAAATGCACCTCGTGCTTTTACCTATTGTGATATTATGAATAAGTTGGTTCAAAACATTGAGTTTTTGAGACAATTTGGTGTGCCTCAGAGTTCCATCTCTCTCATGGTGGTGAATTTTCCATCTGCAACATATATACATCATTCCAAATTTGTGGAAGCTGTCAAGACAGTTAAGGAAATCGGTTTGGATCCTTCGAAAACAACTTTTGTCATGGCGGTTCAAGTGCTTTTGGGTTTGAGTCAAGCAGCGTGGGAATCGAGATTTGAATTTTTCCATCGGTGGGGCTGGGATCGCGAAATGACTCTTCAAGCTTTCAGGAAGTTTCCCAATTTTATGAAGCTGTCACAGGAGACAGTTGCAAAGAAAATGAGTTACATGGTGAATGATATGGGTTGGACATTAGAAGATGTTGCTGGATTTCCTCCTGTTCTAGGCTTCAGCTTGGAGAAGAGGATTATCCCTAGGCTCTCAGTAATCAAAGTCTTGAAATCAAAAGGCCTGATCAAGAATGATATGCACTTAAGTTCCTTTATGTGCTCATCTGAGGAAGTTTTTTTGAAGAAATTTGTCATCAATTTTCAGGACGATGCGCCTTTACTAACAGATGTCTACAAAGGTTTGATTGATCATCAGGATGTGATTTAG 1203 0.4115 MVPNSLIARLTSSFSYYKCSRIQLSSVFHHNAFPFSFNSFSSCTSSSDSESDADYCKGDTYTISYLTKSCGLSPDSAKKLSIGLNLKDPDGPNAVLDLLKNYGFSKTQVAKLVGKHPLLLFANAKRTLLPKLKFLHSIGVSTTDMPQVLLANHILLVRSLKNCIVPRYKILRGVLRNDQEAARALRNAPRAFTYCDIMNKLVQNIEFLRQFGVPQSSISLMVVNFPSATYIHHSKFVEAVKTVKEIGLDPSKTTFVMAVQVLLGLSQAAWESRFEFFHRWGWDREMTLQAFRKFPNFMKLSQETVAKKMSYMVNDMGWTLEDVAGFPPVLGFSLEKRIIPRLSVIKVLKSKGLIKNDMHLSSFMCSSEEVFLKKFVINFQDDAPLLTDVYKGLIDHQDVI* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1556 400 Gene3D Transcription termination factor 3, mitochondrial 177 381 IPR038538 -
Lja6g1556 400 SMART mt_12 253 283 IPR003690 GO:0003690|GO:0006355
Lja6g1556 400 SMART mt_12 219 249 IPR003690 GO:0003690|GO:0006355
Lja6g1556 400 SMART mt_12 182 214 IPR003690 GO:0003690|GO:0006355
Lja6g1556 400 SMART mt_12 320 354 IPR003690 GO:0003690|GO:0006355
Lja6g1556 400 SMART mt_12 288 319 IPR003690 GO:0003690|GO:0006355
Lja6g1556 400 SMART mt_12 146 177 IPR003690 GO:0003690|GO:0006355
Lja6g1556 400 SMART mt_12 110 141 IPR003690 GO:0003690|GO:0006355
Lja6g1556 400 PANTHER CGI-12 PROTEIN-RELATED 36 393 IPR003690 GO:0003690|GO:0006355
Lja6g1556 400 Pfam mTERF 199 372 IPR003690 GO:0003690|GO:0006355
Lja6g1556 400 Pfam mTERF 96 249 IPR003690 GO:0003690|GO:0006355
Lja6g1556 400 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 36 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1556 Lja-Chr6 42130338 42131673 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lja6g1556 mTERF 2.1e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1556 K15032 - gmx:100786641 459.914