Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1540 ATGGATGTGGTTCAGTTACACACTCTATCTGAAACTGATGATAAGATGAAGGAAGAAGAAGTTGTGCTTCCTGGGTTTAGATTTCATCCAACAGATGAAGAGCTTGTTGGGTTTTATCTCAAGAGAAAGGTGGGGAAGAAGCCTCTCCGAATCGATCTCATCAAACAAGTTGACATCTACAAATACGACCCATGGGATCTTCCCAAAGTGAATTCAGTTGGGGACAAAGAATGGTACTTTTTTTGCAAGAGAGGGAGAAAGTACAGGAACAGCATAAGGCCAAACAGGGTGACAAAGTCTGGGTTCTGGAAAGCCACAGGGATTGACAAGGTCATATATAGTGTTAAAGAACCTCATCATCAAAGCATTGGCCTCAAGAAATCACTTGTCTACTACCGTGGAAGTGCTGGGAAAGGCACCAAAACCGATTGGATGATGCATGAGTTTCGCCTTCCACCAAATAATCCACATGATGCTAATGCAAGCAATGACGTTCAAGAAGCTGAGGTGTGGACACTCTGCAGGATATTCAAACGTATCACACCTTACAAAAAGTACACTCCAAATTTGAAAGACTCAGCAGCCGACACCAAACCAAACCCAGAAACTTCTATAGACTCTGACAATTGCAAGTCATTCATGCAACAAGTTGAAATGAAACCCATTTTTGGATTTGTTGATCAAAATAAACAGTTGCTTCTGGGCCAGTTTGGCTCTGTAGCTCTTCCTGGGGTTCCATCAACATTGCCTTACCCTAGCTCATGGAATCAGAATATTGTTGAGGATACAATATTTGCAAATCAGAACTGGGATGATCTGAGATCTGCAATTCAGTTTGCCAATGATCCATCCAAGGTTTATGATAATTTCATAGAAACATATATACCACCCTACTTTTCTTAG 903 0.4131 MDVVQLHTLSETDDKMKEEEVVLPGFRFHPTDEELVGFYLKRKVGKKPLRIDLIKQVDIYKYDPWDLPKVNSVGDKEWYFFCKRGRKYRNSIRPNRVTKSGFWKATGIDKVIYSVKEPHHQSIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNNPHDANASNDVQEAEVWTLCRIFKRITPYKKYTPNLKDSAADTKPNPETSIDSDNCKSFMQQVEMKPIFGFVDQNKQLLLGQFGSVALPGVPSTLPYPSSWNQNIVEDTIFANQNWDDLRSAIQFANDPSKVYDNFIETYIPPYFS* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1540 300 ProSiteProfiles NAC domain profile. 22 179 IPR003441 GO:0003677|GO:0006355
Lja6g1540 300 PANTHER CONTAINING PROTEIN 9, PUTATIVE, EXPRESSED-RELATED 11 218 - -
Lja6g1540 300 Pfam No apical meristem (NAM) protein 24 151 IPR003441 GO:0003677|GO:0006355
Lja6g1540 300 Gene3D NAC domain 31 182 IPR036093 GO:0003677|GO:0006355
Lja6g1540 300 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 218 - -
Lja6g1540 300 SUPERFAMILY NAC domain 15 178 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1540 Lja-Chr6 41799459 41802301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1540 11 179 NAC Transcription Factor Family AT5G39820 59.459 7.43e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja6g1540 NAM 1.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1540 - - gmx:100819795 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1540 6 41799459 41802301 Lja6g1540 6 41799459 41802301 ECH