Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1534 ATGATGAGGCTGAAAACATATGCTGGTCTGAGCTTGATAGCAACTTTGGCTATCACATATCATGCATTTAACAGTAGGGGTCAGTTTTATCCGGCGATGGTGTATCTCTCGACTTCCAAGATCAGTTTGGTGCTTCTTCTCAACATGGGTTTGGTTATCATGTGCACTCTTTGGCAATTGACCAAAAAGCTGTTCCTGGGTTCCCTTCGGGAGGCGGAGGTTGAGAGGCTTAATGAGCATTCGTGGAGGGAGGTTATGGAAATCCTCTTTGCCATTACTATTTTCCGGCAGGACTTCTCGGTTACGTTCCTTGCCATGGTCACCGCGCTGTTATTGATTAAGGCTTTGCATTGGTTGGCACAGAAGAGAGTCGAGTACATCGAGACCACTCCTTCGGTGACTTGGCTATCCCATGTTCGAATCGTATCTTTTATGGGTTTCCTCCTCCTTCTGGATAGCATTTTCTTATATAGTTCTATGAAACATTTGATAGAAACGTGGCAGGCTTCGGTTTCACTATTCTTTTCTTTCGAGTACATGATATTGGCAACAACAACAGTTTCGATTTTTGTAAAATATATTTTCTATGTCAGTGACATGCTTATGGAGGGACAGTGGGAAAAGAAACCAGTCTTCACATTTTACCTGGAACTTATCAGAGACTTGCTTCACTTGTCTATGTATCTGTGCTTCTTTTTCTTGATATTTGTGAACTATGGTATTCCCCTGCACCTAATACGGGAGCTGTACGAGACATTTAGGAATTTCAAAGTTCGTATTGCAGATTACATTAGATATCGTAAGATCACTTCAAATATGAATGATCGCTTTCCAGATGCCACACCTGAAGAGCTTAATGCAAGGGACGCAACCTGCATAATCTGTCGTGAAGAGATGACTACAGCCAAGAAACTTATATGTGGACATCTTTTTCATGTTCATTGCCTCCGATCATGGCTGGAGCGGCAGCATACTTGCCCTACCTGCCGAGCCTTGGTTGTGCCACCAGAAAATGGAACAACTGTTGCTGGAGGGCAGCAAGGATCACAGTCAGATGGTCACCGGCAGGGAACTGGGACAGCTGGAAGCACAGCTCAAAATGAAGCTGGCAGCGGGATGGCAACTGATAGTTTGAGTCGGCATGAAGCTAGGCTCCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTTTATCCCTCTGCATCATCTTCTGTATGCTCTCCGGGGCACGCATTTTATACCCCTTCTAGTACTGGATTTAATGGAGAACAAGCTTCCAGTGAACAAGCACAAAAGCAGTTTCTTATCCCTGGTCAACCAACAAATGTATCCTTTCCTCCAATGGGACACTACAATTTTCTGCCTTCCCAAACGTTTGCAGCCCCTGTGAATTATGGAGAAGCGTTTGGAAATGATCCAAACATCCCAAGCTCTCAGCTGGAAGCTCATAGAAAATTTCTCCGATGGCAGATTGAGGTTTTGGAAAAGCAGTTACGGAATCTTCCAGAGACAAAAGCTGATGACAGAAGTGTAGATGACGGCACATCATCATCAGATAGCAGAGGCAAGCTTATTACTTCATCGTCATCTGTTTCTGGTCATGTTCACCATGATGAGGAGATTCAAGATGGGAAAGCCTAA 1650 0.4424 MMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCTLWQLTKKLFLGSLREAEVERLNEHSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPSVTWLSHVRIVSFMGFLLLLDSIFLYSSMKHLIETWQASVSLFFSFEYMILATTTVSIFVKYIFYVSDMLMEGQWEKKPVFTFYLELIRDLLHLSMYLCFFFLIFVNYGIPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELNARDATCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSDGHRQGTGTAGSTAQNEAGSGMATDSLSRHEARLQAAAAAASIYEKSYVYPSASSSVCSPGHAFYTPSSTGFNGEQASSEQAQKQFLIPGQPTNVSFPPMGHYNFLPSQTFAAPVNYGEAFGNDPNIPSSQLEAHRKFLRWQIEVLEKQLRNLPETKADDRSVDDGTSSSDSRGKLITSSSSVSGHVHHDEEIQDGKA* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1534 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Lja6g1534 549 MobiDBLite consensus disorder prediction 503 549 - -
Lja6g1534 549 MobiDBLite consensus disorder prediction 340 380 - -
Lja6g1534 549 PANTHER - 1 451 - -
Lja6g1534 549 MobiDBLite consensus disorder prediction 520 535 - -
Lja6g1534 549 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Lja6g1534 549 SUPERFAMILY RING/U-box 272 336 - -
Lja6g1534 549 SMART ring_2 292 329 IPR001841 -
Lja6g1534 549 MobiDBLite consensus disorder prediction 340 374 - -
Lja6g1534 549 CDD RING-H2_synoviolin 289 330 - -
Lja6g1534 549 PANTHER RING ZINC FINGER PROTEIN 1 451 - -
Lja6g1534 549 Pfam Ring finger domain 291 330 IPR001841 -
Lja6g1534 549 MobiDBLite consensus disorder prediction 503 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1534 Lja-Chr6 41736552 41743028 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1534 1 523 C3H Transcription Factor Family AT3G16090 65.152 0.0 670
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1534 K10601 - gmx:100816441 893.649