Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1532 ATGGATGCTTTTGATGATATTCTATCCGGAGCTCCTGCTCCACGTGCTCGTCGAGGTAGCAAGTTTATGCCAAAGGCCAAACTGAAACAGCTTCCTCAAAAGGAAATATCTGCATCAGAACACGCGACCTCATCTAAAGATGGAGAGAACGTGCCTGTTGCTTCATCAGCCACAAGCACAAAATCAGGAGGAATTTTGAATGAATGTCATGATGCTGTTGCTTCAACTTTAAGTACATCAGCTGAAGATTCTATCAGGTCCAATCATCGACCACAGGAAGAACTTTCAAATTTGGAGGATGCCACAAAATCAGCATCTGAAGGCCTTGAGGCGGGTTTAGTCACTAACTCTATTCCTGAGACCAATCTCAATAATGGGGCAAAACAACCAATCCACCCTGCTAATGCTGTAGAAAATGAAAATACTGTGGCTGCTCAATCTACAACTAACTCATCCATCAGTAGGATGGAAGAACCACCTAAAAGTGGGGAAGGTTCAATTCCTGATAGCAACAAAAATTTGGAACATATTGATAATTCAGTGCCAGTTATCCCAGATGCAAACTTCAAGAGTGCTTTGGAGAATAATGCTGTAACATTTGAGAGCAATATTCATTCAAATTTGAACTCTGGAAGAGAACAAGAGGCAGTGTCTGGGGAATCGGAATGGAATCCTTTCAGCGACGCCCTCCCTGATCCTGGCACTAGGAATGCTCGTAAGTTTCAACCCAAGATTAAGCCACGACCTAGAGTAAGCATTGCACCGGCTATCGCTTCTGCATCATCTAGTGATATGATGGAAAAGTCTACTCAGTTGCATGTTTCTTGCACAAATGAAGTTCAATCTTTTCAGTTTAGTGGTGATGGCATTGGTGGGCAAAATACATTCTCTGAAGACAAAAGAAACCTGGCATCAGTTACTCCTTCCCAACCAGATTCCCTGAATGCTATGCCTTCGGAGGTTACAGCTCATGATGGAACTAGAGATTCGGCTTCTAGTTTTGGAAAACCAGCTCCTGATAATCTTACCACCCAAGATCCATTAACCTTAAATGAAGCTGCAGTCTTCGAGGAGGATGATACTCACACTAACATTAGAAGGTTGGAAACAGAGGAAGTTGTGGACTTGAATACTGCCTGCTCAAATGGTGGCGTCTTTGATTATCAATCAATAGATTCTGCCACAGATCCAACTTCTGAAATTCCAGTGAATGAAGAATTGACAAATGCTGCAGATTGTCCCACGTTGGCTGATGTTTTGCATAAATATGTTACTGTAGAAAAAGAAGTTGCCAATGGAAGAAAGAAGGATAGTTCCCTGAGGAAGCACAGAAGATCTACTGCTGGCGAGGAGGACAAAGGGGGTAAAACCGCAAGGCAGCTGAGAAAAAGTGCAGCTCGAGAACCTGCTAACAGCTCATTGAATAAGGATGTTGATGATGATGGTGACATTGACCCTCTGTATAATTATAATATAGATGAACTAGAAGAAAATGATGATGAAGACGAACTAGATTATTCATCCAAGAAGAAAACAACATCAACCAGTTCAAAGAAGAAATCTGTGGCTAAAAATGAAAAAACGTCTCAAAAGCGTAAGAAGTCTAATGATGATTTAGAAAATACTACTAAAAAATCTCTGAAAAAGTTCTCTCATTCCACCCTACGAAGAAAACGATGTGAGGATCTGCTGAAAACTCCTGAAGATGAATGGGATCCTCGAAATATGCCTATAAAGGATATTATTATACTTGCAGAATATAAGGAGCGGTTGGCGAAAAAGGACCCAACAACTTCAAAAACATCTTCCACCAATCAAAGTGGTGGAGATCCTTTTTATGAAGCCGGTGCCAATTACGAAGAGGGGTTCTTTGGCTCAGAAAACCCAAATGATAATCAAGACACTGAAAATGTTACAGACACTACCGCTTTAATTAATTACCAGTCCTTCATGGACAAGGCACCTAGGGGAAAATGGTCAAAACAAGACACTGAACTGTTTTATGAGGCTGTTAGGGAGTTTGGCACAGATTTTTCTATGATTCAACAGCTTTTCCCTGATCGAACACGTCATCAAATTAAGTTGAAGTACAAGAAGGAAGAGCGGCAGCATCCTTTACAGTTATCCGATGCTGTGAATAGTCGTTCAAAAGGTTGA 2157 0.4117 MDAFDDILSGAPAPRARRGSKFMPKAKLKQLPQKEISASEHATSSKDGENVPVASSATSTKSGGILNECHDAVASTLSTSAEDSIRSNHRPQEELSNLEDATKSASEGLEAGLVTNSIPETNLNNGAKQPIHPANAVENENTVAAQSTTNSSISRMEEPPKSGEGSIPDSNKNLEHIDNSVPVIPDANFKSALENNAVTFESNIHSNLNSGREQEAVSGESEWNPFSDALPDPGTRNARKFQPKIKPRPRVSIAPAIASASSSDMMEKSTQLHVSCTNEVQSFQFSGDGIGGQNTFSEDKRNLASVTPSQPDSLNAMPSEVTAHDGTRDSASSFGKPAPDNLTTQDPLTLNEAAVFEEDDTHTNIRRLETEEVVDLNTACSNGGVFDYQSIDSATDPTSEIPVNEELTNAADCPTLADVLHKYVTVEKEVANGRKKDSSLRKHRRSTAGEEDKGGKTARQLRKSAAREPANSSLNKDVDDDGDIDPLYNYNIDELEENDDEDELDYSSKKKTTSTSSKKKSVAKNEKTSQKRKKSNDDLENTTKKSLKKFSHSTLRRKRCEDLLKTPEDEWDPRNMPIKDIIILAEYKERLAKKDPTTSKTSSTNQSGGDPFYEAGANYEEGFFGSENPNDNQDTENVTDTTALINYQSFMDKAPRGKWSKQDTELFYEAVREFGTDFSMIQQLFPDRTRHQIKLKYKKEERQHPLQLSDAVNSRSKG* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1532 718 MobiDBLite consensus disorder prediction 98 157 - -
Lja6g1532 718 MobiDBLite consensus disorder prediction 520 547 - -
Lja6g1532 718 MobiDBLite consensus disorder prediction 303 345 - -
Lja6g1532 718 MobiDBLite consensus disorder prediction 222 241 - -
Lja6g1532 718 SUPERFAMILY Homeodomain-like 657 705 IPR009057 -
Lja6g1532 718 PANTHER TRANSCRIPTION FACTOR TFIIIB COMPONENT B'' HOMOLOG 236 717 - -
Lja6g1532 718 MobiDBLite consensus disorder prediction 303 317 - -
Lja6g1532 718 MobiDBLite consensus disorder prediction 325 345 - -
Lja6g1532 718 MobiDBLite consensus disorder prediction 36 65 - -
Lja6g1532 718 Coils Coil 525 545 - -
Lja6g1532 718 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 236 717 - -
Lja6g1532 718 Pfam Myb DNA-binding like 649 717 IPR039467 -
Lja6g1532 718 MobiDBLite consensus disorder prediction 697 718 - -
Lja6g1532 718 MobiDBLite consensus disorder prediction 443 463 - -
Lja6g1532 718 MobiDBLite consensus disorder prediction 430 553 - -
Lja6g1532 718 CDD SANT 658 699 IPR001005 -
Lja6g1532 718 ProSiteProfiles SANT domain profile. 658 702 IPR017884 -
Lja6g1532 718 Gene3D - 659 717 - -
Lja6g1532 718 MobiDBLite consensus disorder prediction 484 503 - -
Lja6g1532 718 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 651 707 IPR017930 -
Lja6g1532 718 MobiDBLite consensus disorder prediction 1 177 - -
Lja6g1532 718 ProSiteProfiles Myb-like domain profile. 651 701 IPR001005 -
Lja6g1532 718 SMART sant 655 703 IPR001005 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lja6g1532 Myb_DNA-bind_7 2.6e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1532 K15198 - lja:Lj6g3v0933490.1 711.449