Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1530 ATGGTGCCTGCGACAACGGAAGAAGAGCAATATTTCGTGACTGCACCGCCCTCTAGGTTAGTTGAGAGCAGTTATCTTCTCTTCTTCATCTCCAACATTTTACATCACATGGCTGCTGTGCGAGAAATTTGTGGATCCTTAATGTCTCTCTCAAAATTGCAGCATGCTTCACCTTCTCAACTTCCCTTCCTCCGAACAATGACTTCTAAGATTTTTGTTAAGGGTTTAGCATTTTCTACTACAGAGGATAAATTAGCTGAAGCTTTTTCTCAATACGGCAAAGTCCTGAAAGCTGATATAGTCTTGAATAGAGCTAAAACTAGATCCAAAGGTTTTGGGTATGTGACTTTTGCTAAGGAGGAAGATGCTCAGAAGGCACAGATTGGCATGAATAGAAAAATATTACATGGACGTGTTCTGTACGTAGACATGGAACCACCTGACAAGCATAAGAAATCTATTTCAGAGGGGGCAACTGATAGTTGA 486 0.4095 MVPATTEEEQYFVTAPPSRLVESSYLLFFISNILHHMAAVREICGSLMSLSKLQHASPSQLPFLRTMTSKIFVKGLAFSTTEDKLAEAFSQYGKVLKADIVLNRAKTRSKGFGYVTFAKEEDAQKAQIGMNRKILHGRVLYVDMEPPDKHKKSISEGATDS* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1530 161 PANTHER RNA RECOGNITION MOTIF 50 152 - -
Lja6g1530 161 SUPERFAMILY RNA-binding domain, RBD 66 149 IPR035979 GO:0003676
Lja6g1530 161 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Lja6g1530 161 Gene3D - 47 160 IPR012677 -
Lja6g1530 161 SMART rrm1_1 70 143 IPR000504 GO:0003723
Lja6g1530 161 PANTHER TRANSFORMER-2-RELATED 50 152 - -
Lja6g1530 161 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1530 Lja-Chr6 41715552 41718584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1530 68 146 Eukaryotic Initiation Factors Gene Family AT4G34110 32.927 2.12e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1530 - K13195 gmx:100527061 160.229