Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1505 ATGTTGCCCTTTCTTTTTGGAGGCCCTGGGCTGTGGGCCTGCTTGCACAGGCCCAGGGCCGGCCCTGCTTCTCACACTGTCCTTCCGAATCAACCAACTCCAGAGTGTCATTTATGGCTGTCCGATGTGGATCAAATGATGGGTGAACGCCACACAGACGTTGTCTACATCTACAAAGCAAAACATGACCAGTATTGCATAGAGAGGATGAAGGACTCTCTTAGCAAGATTCTAGTTCACTACTATCCCGTTGCTGGCCGTTTGAACTTCACTCAAAATGGTCGAATCGAAATTGACTGTAACGCAAAAGGGGTCATAATGCTTGAAGCTGAAACAACAAAAACAATGGCTGATTTTGGAGACTTTTCACCCTCTGACTCCACCAAGGAACTTGTTCCAATAATTGATTACACTAAGCCTATTGAGGAGCTTCCCCTGTTAGTGCTGCAACTCACAAGATTCAATGGTGATGATGAGGGCATAATTGCTATTGGGGTTGCTTGGCTCCACACTTTGTCTGATGGGCTTGGTGCCACTCGTTTCATCAACTCATGGGCGAAAATAGTTCGAGGGGACACACTAGATCCCCGTGAAGTTCCCTTTCTAGATCGAACAATACTTAAATTCTCACACCCTCCATTGGCACCACGTTTTGAGCACAAAGAGTTGAAGCCTCTGCCACTTATTCTAGGAAGCTCCGATTGTAGTGTTGAAAGAAATAAGAAGGTAATTTCAGAATTGTTTAGACTCACACCAGAGCAAGTAGAGAAGCTCAAGAAGGAGGCCAATGGTAATGTTCAACAAGGATTTGAAGTTATTGGAGCACATATATGGAGATGTGCATCAAAGGCTCGTGAGCTGGATCAGAATCAACCAACTGAAGTTAGGTTCCATGCTGAAAATCGCAGCACAATGGTTCCACCTCTACCTAGTAATTATTTGGGGAATGCTCTGACACATACAACAGCGACAGGTTATGTTGGGGAAATCACATCAGAGCCTTTGAGCTATGTTGCACAAAAGATGAGGGAAGCAATTGAGATGGAGCATTTGGATGATGCAAGGGCTTTATATTTTGGTGTTAAAGGTAAGAATGTTACCCCATTTTCTGGGAATCCTAATCTTCGTATCGCAAGCTGGATGAGCTTGCCAGCATATGAAGCTGATTTTGGTTGGGGAAAACCTGTGTTCTTTGGCCTAGCATTCGTGTCTCTTCATGATAGGGCAATAATTCTTCCGAGCCCAAATGGGGATGACTCTGTTACTGTGTTAATGTTATTCCAAATGGCACACATGCAACTTTTTAAGGAATTCTTCTATGCAGATATATCCACTTCCGGCAGAAATACTATGGGCTAG 1359 0.4422 MLPFLFGGPGLWACLHRPRAGPASHTVLPNQPTPECHLWLSDVDQMMGERHTDVVYIYKAKHDQYCIERMKDSLSKILVHYYPVAGRLNFTQNGRIEIDCNAKGVIMLEAETTKTMADFGDFSPSDSTKELVPIIDYTKPIEELPLLVLQLTRFNGDDEGIIAIGVAWLHTLSDGLGATRFINSWAKIVRGDTLDPREVPFLDRTILKFSHPPLAPRFEHKELKPLPLILGSSDCSVERNKKVISELFRLTPEQVEKLKKEANGNVQQGFEVIGAHIWRCASKARELDQNQPTEVRFHAENRSTMVPPLPSNYLGNALTHTTATGYVGEITSEPLSYVAQKMREAIEMEHLDDARALYFGVKGKNVTPFSGNPNLRIASWMSLPAYEADFGWGKPVFFGLAFVSLHDRAIILPSPNGDDSVTVLMLFQMAHMQLFKEFFYADISTSGRNTMG* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1505 452 Pfam Transferase family 24 440 - -
Lja6g1505 452 Gene3D - 232 441 IPR023213 -
Lja6g1505 452 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 22 443 - -
Lja6g1505 452 Gene3D - 22 225 IPR023213 -
Lja6g1505 452 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 22 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1505 Lja-Chr6 41201080 41202770 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1505 24 440 Monolignol Biosynthesis Gene Families AT5G48930 36.239 1.25e-87 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1505 K13065 - gmx:100779814 527.709