Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1501 ATGGTAACCATTTCGGCTTCTCACACTGTCCCTCCGAATCAACCAACTCCACACTGTCATTTATGGCTGTCCGATATGGACCAAGTGTCGCGTCAACGCCACACACCCCTTGTCTACATCTACAAAGCAAAACACGACCAGTATTGCATAGAGAGGATGAAGGACTCTCTTAGCAAGATTCTAGTTCACTACTATCCTGTTGCTGGCCGTTTTAGCTTCACTGAAAATGGTCGAAAGGAAATCAATTGTAACGCCAAAGGGGTCATCTTGCTTGAAGCCGAAACAGAAAAAACAATGGCTGATTTTGGAGACTTTTCACCCTCTGACTCCACCAAGGAACTTGTTCCAACAATTGATTACAACCATCCTATTGAGGAGCTTCCACTGTTAGCAGTGCAGCTCACAAGATTCAATGGTGGTGAAGGGGGCCTTGCTGTTGGGGTTGCTTGGGTCCACACTTTGTCTGATGGGCTTGGTTGCACCCGTTTCTTCAATTCATGGGCGAAGATAGCACGAGGGGACACACTCGAGCCCCATGAAATGCCCTTTTTAGATCGAACATTACTCAAATTCTCACACACCCCTTTGGCACCACGTTTTGAACACAAAGAGTTGAAACCTCTGCCACTTATTCTAGGAAGCTCTGATGATTGCAGTGCTAAAAAGAGTAAAAAAGTAACAACTGCATTGTTTAGACTCACGTCAGAACAAGTTGAGAAGCTGAAGAAGGAGGCGAATGGTGATATTCCAGAAGGGTCAAGACCTTATAGCAGATTTGAAGTTATTGGTGCGCATATATGGAGATGTGCATCCAAGGCTGGTGCGTTTGATCAAAATCAACCAAGTGTGATTCGATTCAATGCTGAAAATCGTGGTAGAATGGTTCCACCCCTACCTAGAAATTATTTTGGGAACGCTCTAACACAAACAGCAGCAACAGGTTATGTTGGGGAAATCACATCAAAGCCGTTGAGCCATGTTGCACAGAAGATAAGGGAAGCAGTTGAGGTGGTGAATGATGAGTACATAAGGTCACAGATTGATGTTATAAGGTGTCAGAAGCATTTGGATGATGCAACGGCTTTGTTTTCTCCATTTAGTGGGAATCAAAATCCTAATCTTCTTTTCACAAGCTGGATGAGCATGCCGATGTATGAAGCTGATTTTGGAAAGGGAAAACCTGTATACTTTGGCCTAGCATATGTGTCCTCTCATGATAGGGCATACATTTTTCTTAGTCCAGATGGGGATGGCTCTGTAATTGTGTCGATGTTCTTCCAAATGTCAAACATGCAACTTTTCAAGGAATTCTTCTACGCTGATATATCCACCTTTGGTGGAACCACACTACCGTCTAGGCTATGA 1365 0.4388 MVTISASHTVPPNQPTPHCHLWLSDMDQVSRQRHTPLVYIYKAKHDQYCIERMKDSLSKILVHYYPVAGRFSFTENGRKEINCNAKGVILLEAETEKTMADFGDFSPSDSTKELVPTIDYNHPIEELPLLAVQLTRFNGGEGGLAVGVAWVHTLSDGLGCTRFFNSWAKIARGDTLEPHEMPFLDRTLLKFSHTPLAPRFEHKELKPLPLILGSSDDCSAKKSKKVTTALFRLTSEQVEKLKKEANGDIPEGSRPYSRFEVIGAHIWRCASKAGAFDQNQPSVIRFNAENRGRMVPPLPRNYFGNALTQTAATGYVGEITSKPLSHVAQKIREAVEVVNDEYIRSQIDVIRCQKHLDDATALFSPFSGNQNPNLLFTSWMSMPMYEADFGKGKPVYFGLAYVSSHDRAYIFLSPDGDGSVIVSMFFQMSNMQLFKEFFYADISTFGGTTLPSRL* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1501 454 Pfam Transferase family 1 439 - -
Lja6g1501 454 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 4 442 - -
Lja6g1501 454 Gene3D - 214 440 IPR023213 -
Lja6g1501 454 Gene3D - 1 207 IPR023213 -
Lja6g1501 454 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1501 Lja-Chr6 41066971 41069046 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1501 2 439 Monolignol Biosynthesis Gene Families AT5G48930 34.545 1.73e-89 277