Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1500 ATGGTAACCATTACGGCTTCTCATATTGTCCTTCCGAGTCAATCAACTCCACAGTGTCATTTATGGCTGTCTGATATGGACCAAGTGGTGCGTCAACGGCACACACCCCTTGTCTACATCTTTAAAGCAAAACATGACCAGGATCACATAGAGAGGATGAAGGACTCTCTTAGCAAGATTCTAGTTCACTACTATCCCGTTGCTGGCCGTTTGAGCTTAGCTGAAAATGGTCGAGTGGAAATCAATTGTAACACCAAAGGGGCCATATTGCTTGAAGCTGAAACAACAAAAACAATGGCTGATTTTGGAGACTTTTCACCCTCTGACTACACCAAACAACTTGTTCCTACAATTGATTACACTCAGCCTGTTGGGGAGCTTCCCCTGTTAGTGGGCCTTGCTGTTGGGGTTGCTTGGTTCCACCTTTTGTCTGATGGGCTTGGTTGCACTCGTTTCATCAACTCCTGGGCGAAGATAGCACGAGGGGACATACTAGAGCCCCATGAAATGCCCTTTTTAGATCGAACATTACTCAAATTCTCACACCCCCCTTTGGCACCACGTTTTGAACATGAAGAGTTGAAGCCTCTTCCACTTATTTATGGAAGCTCTGATTGTAGTGTTGAAAGAAATAAAACGGTAATTACAACATTGTTAAGACTCACGCCACTACAAGTAGAGAAGTTGAAGAAGCAGGCCAATGGTGATGTCCCAAAAGGGTCAAGACCTTATAGCAGATTTGAAGTTATTGGTGCACATATATGGAGATGTGCATCTAAGGCTCGTCACCTTGATCAGAATCAACCAACTGTGGTTAGGTTCAATGCTGAAAATCGCAATAGAATGGTTCCACCTCTACCTCGTAATTACTTTGGGAATGCTCTAACACAAACAGAAGCAACATGTAATATTGGGGAAATAACATCAAAGCCATTGAGTCATGTTGCACACAAGATAAGGGAAGCAATTGGGGTGGTGAATGATGAGTTCATAAGGTCACAGATTGATGTTATAAGGTGTCAGAACCATTTGGATGATGCAAGGGCTTTGTTTTTAGGTGGTGAAGGTAAGAATGCCCACTTTGGTGGGAATCCTAATCTTCATCTCACAAGCTGGATGAGCATGCCAATGTATGAAGCTGATTTTGGTTGGGGAAAACCTGTATACTTTGGCCTAGCATATGTTCCCCCTCATGACAGGGCGGTGACTCTTCTGAGCCCATATGGGGACGGCTCTGTTACTGTGTTAATGTTCTTCCAGATCGCACACATGAAACTTTTCAAGGAATTTTTCTACGCGGATATATCAACTTGTTACGGCGGAATTCTACTATCGGCTAGGCTATGA 1347 0.4365 MVTITASHIVLPSQSTPQCHLWLSDMDQVVRQRHTPLVYIFKAKHDQDHIERMKDSLSKILVHYYPVAGRLSLAENGRVEINCNTKGAILLEAETTKTMADFGDFSPSDYTKQLVPTIDYTQPVGELPLLVGLAVGVAWFHLLSDGLGCTRFINSWAKIARGDILEPHEMPFLDRTLLKFSHPPLAPRFEHEELKPLPLIYGSSDCSVERNKTVITTLLRLTPLQVEKLKKQANGDVPKGSRPYSRFEVIGAHIWRCASKARHLDQNQPTVVRFNAENRNRMVPPLPRNYFGNALTQTEATCNIGEITSKPLSHVAHKIREAIGVVNDEFIRSQIDVIRCQNHLDDARALFLGGEGKNAHFGGNPNLHLTSWMSMPMYEADFGWGKPVYFGLAYVPPHDRAVTLLSPYGDGSVTVLMFFQIAHMKLFKEFFYADISTCYGGILLSARL* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1500 448 Gene3D - 203 433 IPR023213 -
Lja6g1500 448 Gene3D - 1 196 IPR023213 -
Lja6g1500 448 Pfam Transferase family 1 432 - -
Lja6g1500 448 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 4 435 - -
Lja6g1500 448 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1500 Lja-Chr6 41012899 41014278 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1500 2 432 Monolignol Biosynthesis Gene Families AT5G48930 35.892 1.67e-92 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1500 K13065 - gmx:100778626 556.214