Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1492 ATGATGGAGCTTCCAATTGATCAAGTTCAAGAAGGGTCTTCTTCTCAGAAGAAGATGGGAAGAGGGAAAATTGAGATCAAGCGGATCGAGAACACCACAAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAGAAAGCTTATGAGCTATCTGTTCTGTGTGATGCTGAAGTTGCTCTCATTGTCTTCTCAAGCCGTGGCCGCTTGTATGAGTATGCCAACAACAGTGTTAGAGGAACCATTGATAGGTACAAGAAAGCATGTGCTGCTTCATCAAACACAGAATCTGTTTCTGAAGCTAATACACAGTTTTACCAGCAAGAAGCATCCAAATTGAGAAGACAGATTCGAGATATTCAGAATCTAAATAGGCATATCCTTGGTGAAGCTCTTGGCAATCTGAGTCTCAAGGAACTGAAGAACCTCGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACATTGTTTGCTGATGTGGAGTTCATGCAAAAACGGGAAATTGAGCTGCAAAACCATAACAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAGCAACAGCAACAGCAACAGCAGCAGCAGCAACAGAATTTGATGTTGAGCGAGTCATTACCTTCACAATCTTATGATCGGAATTTCTTTCCTGCAAATCTGCTTGGTTCTGATAATCAATATTCGCGTCAAGACCAGACAGCTCTCCAACTTGTCTGA 744 0.4274 MMELPIDQVQEGSSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRGTIDRYKKACAASSNTESVSEANTQFYQQEASKLRRQIRDIQNLNRHILGEALGNLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQQQQQQQQNLMLSESLPSQSYDRNFFPANLLGSDNQYSRQDQTALQLV* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1492 247 ProSiteProfiles K-box domain profile. 105 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja6g1492 247 PRINTS MADS domain signature 56 77 IPR002100 GO:0003677|GO:0046983
Lja6g1492 247 PRINTS MADS domain signature 41 56 IPR002100 GO:0003677|GO:0046983
Lja6g1492 247 PRINTS MADS domain signature 21 41 IPR002100 GO:0003677|GO:0046983
Lja6g1492 247 ProSiteProfiles MADS-box domain profile. 19 79 IPR002100 GO:0003677|GO:0046983
Lja6g1492 247 ProSitePatterns MADS-box domain signature. 21 75 IPR002100 GO:0003677|GO:0046983
Lja6g1492 247 Pfam K-box region 103 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja6g1492 247 Coils Coil 178 209 - -
Lja6g1492 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 28 75 IPR002100 GO:0003677|GO:0046983
Lja6g1492 247 MobiDBLite consensus disorder prediction 1 21 - -
Lja6g1492 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 199 - -
Lja6g1492 247 SMART madsneu2 19 78 IPR002100 GO:0003677|GO:0046983
Lja6g1492 247 CDD MADS_MEF2_like 20 96 IPR033896 GO:0000977|GO:0045944
Lja6g1492 247 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 8 199 - -
Lja6g1492 247 SUPERFAMILY SRF-like 20 96 IPR036879 GO:0003677|GO:0046983
Lja6g1492 247 Coils Coil 105 125 - -
Lja6g1492 247 Gene3D - 31 126 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1492 Lja-Chr6 40814753 40821998 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1492 6 247 MADS-box Gene Family AT3G58780 68.127 9.40e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja6g1492 K-box 4.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1492 K09264 - gmx:100808734 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1492 6 40814753 40821998 Lja6g1492 6 40814753 40821998 ECH