Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1483 ATGAATATGGACAAACTTCCTGGGGACTCTCTGCCAGCTCATGGTCCAATAAAAGTTGGAAGCAGTGCATGGGGAATACCACATACAGCTAATGTATTGCATGATGCAAGTGATGTTAGCTTGTTTTCCAGTTCACTGCCTGTTCTTCCGCATGGAAAATTAGTGAATTCGACTGACTCTGAAGATTATGGTCGACCTGTTGATGATAGCTTGCTGACATTAGATAAAGATCACAAAGAGGAAGAGGGGCAAGATCCTTTTGATGATATGGAAACCAATGCAATTGGAAACCTGCTTCCGGATGATGAAGATGAGCTTTTAGCTGGGATAATGGATGATTTTGACCTTACTAGGTTACCCATTCAATTGGAGGATTTGGATGAAAATGATCTGTTTGCCAATGGTGGGGGATTTGAAATGGACTTTGAACCACAAGACAGCCTTAGTATTGGTCTGTCAAAGATAAGCATATCAGATGGACTTGCTTCGAGTGGTATTGCACAGTATGCAATCCCGAATGGGATGGGAGCGGTGGCCGGGGAGCATCCTTATGGAGAGCATCCGTCAAGGACACTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAACTAAGAATACTATTTGAGCAATATGGGGATATCAGAACGTTGTACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGTACTGCAATGCGCGCTTTACAAAACAAACCTTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCCAAGGATAACCCCTCGGAAAAAGATATAAACCAAGGAACCCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGGGAAACACCACATAAGAGGCACCACAAATTTATTGAGTTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGACATTGCCGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAACTCGCACTTTTAGGCATCAAGTAGGTTCACCTCTGGCCAATTCTCCTCCTGGTAACTGGGCACATTTTGGTAGTCCAATTGAACCTAATCCATTAGGCTCTTTTAGCAAGTCTCCTGGTTTGGGTCATGCAAGCCCTATGAGTACCAACCATTTGTCAGGATTGGCTGCTCTTCTTTCCCCACATACATCAAGCCCTACCAAGGTTGCACCCATTGGGAAGGACCCTCGAAGGGTTACACATCAGTTGTTCGCTAACTCTGGATCAACACTAGGAGCAGCTTTTCAGCATTCTATGTCATTTCCCGAGCAAAAAGTAAATGCAACTCCTAGACCTACATCTACGTTTGGTGAATCACATTCAAGTTCATCAAGTATTGGAACACTGTCTGGTCCTCAATTTCTTTGGGGAAGCCCGACTCCGTATTCGGAGCATCCAAAGACATCTGCCTGGTCTTCTTCTTCTCTGGGACATCCATTTACATCTAGTGACCGAAGGCAGGGATTCCCATATACTAGTCATCACAGTCCTTTTCTTGGCTCCCAGCAACATCATCAGGTAGGGTCTGCTCCATCTGGCCTTCCTCTTGATAGGCATTTTAGCTACTTCCCGGAGTCACCTGATGCTTCTCTCATGAGCCCCGTTGGTTTTGGGAATTTAAACCACGGTGATGGGAATTTTATGGTGAACATGGGTGCTCGTGCATCTGTTGGAGTTAGTGTTGGCCTTTCAGGAACTAATACTGAAATTATTTCACCTAATTTCCGAATGATGTCACCACTGCCTAGGCATGGTTCATTGTTCCTTGGGAATGGTTCCTATACTGGACCAGGAGCAACTACTATTGAGGGGTTGGCTGAACGTGCACGAAGTAGACGTCCTGACAATAATGGGAATCAAATGGATAGTAAGAAGCTGTATCAGCTTGATCTAGAAAAAATCATCAGCGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTGCTTGCTGCTATTGATGAGAATCACTGCGGGACTTATGACTTCGTCTACTTGCCAATTGACTTTAAGAACAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTCCTTCACACATCGTCCCCTTCTTTAAGGCATTTAATGGGAAGAAATGGGAGAAATTTAATAGTGAAAAAGTTGCTTCGCTAGCATATGCACGGATACAAGGAAAGGCTGCGCTTGTGATGCATTTTCAGAACTCAAGCTTAATGAATGAGGACAAGCGGTGCCGACCTATTCTCTTTCATTCAGAGGGCCAAGGTACTGGTGACCAGGAACATCTTCTGTCCAGCAATTTGAATATCTGCATTCGTCAACCGGATGGGTCGTACACAGGTGATTTGTTGGAGAGCCCAAAGGGCAATTTGGATGAGAAGCTAGAGAAAGATTAA 2547 0.4354 MNMDKLPGDSLPAHGPIKVGSSAWGIPHTANVLHDASDVSLFSSSLPVLPHGKLVNSTDSEDYGRPVDDSLLTLDKDHKEEEGQDPFDDMETNAIGNLLPDDEDELLAGIMDDFDLTRLPIQLEDLDENDLFANGGGFEMDFEPQDSLSIGLSKISISDGLASSGIAQYAIPNGMGAVAGEHPYGEHPSRTLFVRNINSNVEDSELRILFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDETRTFRHQVGSPLANSPPGNWAHFGSPIEPNPLGSFSKSPGLGHASPMSTNHLSGLAALLSPHTSSPTKVAPIGKDPRRVTHQLFANSGSTLGAAFQHSMSFPEQKVNATPRPTSTFGESHSSSSSIGTLSGPQFLWGSPTPYSEHPKTSAWSSSSLGHPFTSSDRRQGFPYTSHHSPFLGSQQHHQVGSAPSGLPLDRHFSYFPESPDASLMSPVGFGNLNHGDGNFMVNMGARASVGVSVGLSGTNTEIISPNFRMMSPLPRHGSLFLGNGSYTGPGATTIEGLAERARSRRPDNNGNQMDSKKLYQLDLEKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHCGTYDFVYLPIDFKNKCNVGYAFINMVSPSHIVPFFKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQGTGDQEHLLSSNLNICIRQPDGSYTGDLLESPKGNLDEKLEKD* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1483 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 190 263 IPR000504 GO:0003723
Lja6g1483 848 PANTHER PROTEIN MEI2-LIKE 2 13 845 - -
Lja6g1483 848 SUPERFAMILY RNA-binding domain, RBD 690 775 IPR035979 GO:0003676
Lja6g1483 848 SUPERFAMILY RNA-binding domain, RBD 187 350 IPR035979 GO:0003676
Lja6g1483 848 SMART rrm1_1 191 259 IPR000504 GO:0003723
Lja6g1483 848 SMART rrm1_1 690 766 IPR000504 GO:0003723
Lja6g1483 848 SMART rrm1_1 276 344 IPR000504 GO:0003723
Lja6g1483 848 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 275 348 IPR000504 GO:0003723
Lja6g1483 848 MobiDBLite consensus disorder prediction 513 556 - -
Lja6g1483 848 MobiDBLite consensus disorder prediction 472 497 - -
Lja6g1483 848 Pfam RNA recognition motif 2 688 784 IPR007201 -
Lja6g1483 848 Gene3D - 179 273 IPR012677 -
Lja6g1483 848 CDD RRM2_MEI2_like 274 344 - -
Lja6g1483 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 192 256 IPR000504 GO:0003723
Lja6g1483 848 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 277 342 IPR000504 GO:0003723
Lja6g1483 848 Gene3D - 653 777 IPR012677 -
Lja6g1483 848 CDD RRM3_MEI2_like 691 776 IPR034454 -
Lja6g1483 848 Gene3D - 274 372 IPR012677 -
Lja6g1483 848 PANTHER RNA RECOGNITION MOTIF-CONTAINING 13 845 - -
Lja6g1483 848 CDD RRM1_MEI2_like 189 265 IPR034453 -
Lja6g1483 848 MobiDBLite consensus disorder prediction 513 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1483 Lja-Chr6 40670724 40678397 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1483 185 418 Eukaryotic Initiation Factors Gene Family AT1G71770 25.194 4.40e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1483 - - lja:Lj6g3v0921010.1 1519.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1483 6 40670724 40678397 Lja6g1483 6 40670724 40678397 ECH