Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1471 ATGGCAACCAACAGTTTGAGTATGGAAATGTCAAAGAAGACTTCACTTTTGGGTTTGAGGTTGTGGGTTTTGATTGGGATAGGTGTTGGTGCTTTTATAGTTCTGATTCTTTGCATCTTATCTATATGGGTTATGTTTCGGAGAAAGTCTAGGAGATCTGTGGACAAGTACTCTTTATCCCAAATACCGCACGTCTCGAAGGATATCAAAGTTGACAAAGTAGGGGTGCAGAATTATCATGATCAAGCAGAAAGTATATCTATTCCTGTTCATGATAAGGGCAGTGGTAAGAATTCAGATAAGTTGATAGTTCATTTGGGCACAAGCAAATCCAGTGATCATGATAATATCAGTCAGTGCAGCTCAATTTATCATCATGAGAGAGGATTTAGTTCAATGTCAGGGGAAGAAGGAAGCTCTGGAACAGCTAAGAAGCAGTCTACATTATCATTAGGCGGGATGGTACCTGCCTCTCCTCTAATTGGCTTGCCTGAATTTTCTCATCTTGGGTGGGGCCACTGGTTCACACTTAGAGATCTGGAATTTGCAACTAGTCGTTTCTCTGCAGAGAATGTGATTGGAGAGGGTGGATATGGAGTTGTTTACCGGGGAAGACTGATCAATGGATCCGAGGTCGCAGTGAAGAAACTTCTTAACAACTTGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTGGAGGCTATAGGCCATGTTAGACATAAAAATCTTGTGCGCTTACTTGGATATTGCATAGAAGGAGTTCACAGGTTGCTGGTGTATGAATTTGTGAATAATGGTAACTTAGAACAATGGTTACATGGGGCTATGAGCCAACACGGGGTACTTACATGGGAAGCTCGCATGAAAGTTTTACTGGGCACAGCCAAAGCGCTTGCTTACTTACATGAAGCAATAGAACCAAAAGTTGTTCACCGGGATATAAAGTCTAGCAACATATTGATTGATAATGAGTTCAATGCAAAGGTTTCTGATTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATAACTACTAGAGTAATGGGAACCTTTGGTTACGTGGCACCAGAATATGCTAATACTGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTTGAAGCGGTTACAGGAAGGGACCCTGTAGACTATACCCGTCCTGCTAACGAGGTGAATCTTGTTGAGTGGCTCAAAATTATGGTAGGGACTAGGAGGGCTGAAGAAGTTGTGGACTCAAGACTTGAAGTGAAACCGACAACTCGTGCTTTAAAACGTGCCCTTTTGGTTGCACTCAGGTGTGTTGATCCTGATGCTGAAAAGAGGCCCAAAATGAGTCAGGTTGTGAGGATGCTTGAAGCCGATGAATATCCTTTCCGAGAGGATCGAAGGAATAGAAAGAGCCGCACTGCCAGCATGGAAATTGAGTCTCTGAAGGATGTTTCTGGTCCATCTGATGCTGAAAAGGTGAAGGGTTCTGAAGACTGTGAACCTGTGACGACGAGTCAAGGGCAGTGTTGA 1539 0.4301 MATNSLSMEMSKKTSLLGLRLWVLIGIGVGAFIVLILCILSIWVMFRRKSRRSVDKYSLSQIPHVSKDIKVDKVGVQNYHDQAESISIPVHDKGSGKNSDKLIVHLGTSKSSDHDNISQCSSIYHHERGFSSMSGEEGSSGTAKKQSTLSLGGMVPASPLIGLPEFSHLGWGHWFTLRDLEFATSRFSAENVIGEGGYGVVYRGRLINGSEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRLLVYEFVNNGNLEQWLHGAMSQHGVLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDNEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAVTGRDPVDYTRPANEVNLVEWLKIMVGTRRAEEVVDSRLEVKPTTRALKRALLVALRCVDPDAEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESLKDVSGPSDAEKVKGSEDCEPVTTSQGQC* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1471 512 MobiDBLite consensus disorder prediction 487 501 - -
Lja6g1471 512 Coils Coil 207 227 - -
Lja6g1471 512 Gene3D Transferase(Phosphotransferase) domain 1 263 476 - -
Lja6g1471 512 PANTHER OS01G0323000 PROTEIN 3 501 - -
Lja6g1471 512 CDD STKc_IRAK 193 459 - -
Lja6g1471 512 Pfam Protein kinase domain 189 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1471 512 ProSitePatterns Protein kinases ATP-binding region signature. 193 216 IPR017441 GO:0005524
Lja6g1471 512 Gene3D Phosphorylase Kinase; domain 1 169 262 - -
Lja6g1471 512 SUPERFAMILY Protein kinase-like (PK-like) 171 460 IPR011009 -
Lja6g1471 512 MobiDBLite consensus disorder prediction 465 512 - -
Lja6g1471 512 PANTHER RECEPTOR-LIKE KINASE PLANT 3 501 - -
Lja6g1471 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 309 321 IPR008271 GO:0004672|GO:0006468
Lja6g1471 512 SMART serkin_6 187 458 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1471 512 ProSiteProfiles Protein kinase domain profile. 187 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1471 512 MobiDBLite consensus disorder prediction 465 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1471 Lja-Chr6 40549275 40553771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1471 18 461 Trihelix Transcription Factor Family AT1G70460 40.312 1.78e-97 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lja6g1471 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1471 - - gmx:100813931 879.011