Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1438 ATGAGTTGTTTTCCATGTTGCACGTCACAAGAGAAGATCAACAAGAAGTCATTGAAAAAGAGCATTAAGGAATACCATGAAGCAAAAGTGCTAGCCTCATTTTCCAATATCTCTTTTAAAACTGATAGCGGCAAGAGAAAGTTCATAGCAAATGAGATAGCGAAGCTTGGGAAAGGGAACATCACCTCCAAGACTTTTAGTTACCGTGAGCTCTGTGCTGCAACTCAGAACTTTAACCCTTCCAATTTGATTGGAGAAGGAGGCTTTGGGAGGGTGTACAAAGGATGCATTAAAAACACAAATCAAGTTGTTGCTGTGAAGCAACTAGACAGGAATGGATTTCAAGGAAACAGGGAATTTCTTGTAGAGGTTTTGATTTTGAGTCTTTTGCACCACCCTAACCTTGTCAATTTGGTAGGGTATTGTGCTGAAGGTGAACAGAGGGTTTTGGTATATGAATACATGGCCAATGGCTCTTTAGAAGATCATCTACTTGAATTAACTCCTGAGAGAAAGCCCCTGGACTGGAAAACTAGGATGAAAATTGCAGAAGGTGCAGCAAAAGGACTTGAGTACTTACATGATGTGGCGAACCCGCCAGTGATATACCGCGATTTTAAAGCATCAAACATACTGTTAGATGACGACTTCAATCCAAAGCTCTCTGATTTTGGACTCGCAAAGCTTGGTCCAACTGGGGACAAAACACATGTATCCACCAGAGTGATGGGAACTTATGGCTATTGTGCTCCTGAGTATGCATCAACAGGGCAATTAACAACAAAATCAGATGTGTATAGCTTTGGAGTAGTGTTTTTGGAGATGATCACAGGAAGAAGGGTCATTGACAATTCAAGACCAACAGAAGAGCAAAATTTAGTCATTTGGGCACAACCACTTCTAAGAGACAGAAAGAAATTTACACAAATGGCAGATCCATTGCTAGAAGATAACTACCCTGTAAAGGGTCTTTACCAAGCTCTAGCAGTAGCAGCAATGTGTCTCCAAGAGGAAGCAGATACACGGCCTTTGATCAGTGATGTAGTTACAGCTCTTGACTTTTTGGCAAAGAAGAAATTAGAAGGGGATGAAGAACAACATGCTAAAGAGACTTCTTCTTCTGCTCAGAATGGACATGGAAGTGAAGAAAAGGACTCTGATGGAGTAAATGATGAAGATGATGATGATGATGATGATAGCAATGATGAAGATGATGACGATGATGAAGATGATGACGATGATGAAGATGAAGATGAAAATGAGGATGAGGATGAGGATGAGGATGAGAATGAGGATGATGAAAATGAAGCTGACAATAATAAGGGTAGCAGAGGACAATGA 1341 0.4064 MSCFPCCTSQEKINKKSLKKSIKEYHEAKVLASFSNISFKTDSGKRKFIANEIAKLGKGNITSKTFSYRELCAATQNFNPSNLIGEGGFGRVYKGCIKNTNQVVAVKQLDRNGFQGNREFLVEVLILSLLHHPNLVNLVGYCAEGEQRVLVYEYMANGSLEDHLLELTPERKPLDWKTRMKIAEGAAKGLEYLHDVANPPVIYRDFKASNILLDDDFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLTTKSDVYSFGVVFLEMITGRRVIDNSRPTEEQNLVIWAQPLLRDRKKFTQMADPLLEDNYPVKGLYQALAVAAMCLQEEADTRPLISDVVTALDFLAKKKLEGDEEQHAKETSSSAQNGHGSEEKDSDGVNDEDDDDDDDSNDEDDDDDEDDDDDEDEDENEDEDEDEDENEDDENEADNNKGSRGQ* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1438 446 MobiDBLite consensus disorder prediction 361 446 - -
Lja6g1438 446 SUPERFAMILY ARM repeat 391 436 IPR016024 -
Lja6g1438 446 Gene3D Phosphorylase Kinase; domain 1 62 154 - -
Lja6g1438 446 SUPERFAMILY Protein kinase-like (PK-like) 64 357 IPR011009 -
Lja6g1438 446 CDD STKc_IRAK 84 353 - -
Lja6g1438 446 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Lja6g1438 446 Gene3D Transferase(Phosphotransferase) domain 1 155 380 - -
Lja6g1438 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Lja6g1438 446 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1438 446 PANTHER OS07G0668900 PROTEIN 1 372 - -
Lja6g1438 446 Pfam Protein kinase domain 81 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1438 446 MobiDBLite consensus disorder prediction 387 436 - -
Lja6g1438 446 PANTHER RECEPTOR SERINE/THREONINE KINASE 1 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1438 Lja-Chr6 40050838 40053444 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1438 60 356 Glycoside Hydrolase AT3G07070 73.064 5.13e-165 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lja6g1438 Pkinase 4.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1438 - - gmx:100790474 680.633