Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1435 ATGTCACCCAGCTTCGTCTTCGAACCTCCCAGCGATGAAGAAATCGAATACTCCGAAGAAGAAGAAGTAGAAGAAGAAGAAGAAGAAGATGAAGAAGAAGAAGCCGAGTCAGGATCAGAACCAGAAGAGCAAGAGCGCAAGGAACTGCGAGCTTCGAAGGCGAAGAAGCAGACACAGTCTCCATGGGACTTCGCCAAGTACTCGGAATCAGTGGCGGAGGAACACGCTCGCAGGAGCACAACATCTGTTGACGAGAAAATCACTGCCCTTAGACTTCGTTCCACGCCGCTCATTCATGCCCCCGACCCAGAAGAAGATAATAGCTCTGAATACGAACCTGATCAACAAGAAGATTATAGACCGGAAGAAGAAGAGGAGGAAGAGGGCAATGCTGGTGATAACAAGCCTTATTTTGCTTCTTCTGATGGAACCTCTTTCCATGCTGATTCCTTCATGGAGCTCAATTTGTCTCGCCCTTTACTCCGGGCTTGTGAGGCCTTGGGGTATTCTAAACCAACACCAATTCAGGCGGCTTGTATACCATTAGCATTATCTGGGCGTGACATATGTGGAAGTGCCATTACCGGGTCTGGAAAGACAGCTGCGTTTGCACTACCCACTTTAGAGAGGTTGTTGTTTCGTCCAAAACGCATGCACGCAATAAGGGTCCTTATTCTTACTCCAACCAGAGAGTTGGCAGTCCAAGTTCACAGTATGATTGAGAAGCTTGCTCAGTTTACTGATATAAAGTGCTGCCTGATTGTTGGGGGTTTGTCAACAAAGGTGCAAGAGGTTGCCTTGAGATCAATGCCAGACATTGTTGTGGCTACTCCTGGACGCATGATAGATCATTTACGCAACTCTATGTCAGTGGATTTGGATGATCTTTCTGTTTTAATCCTTGATGAGGCAGATCGTCTTTTAGAGCTTGGATTTAATGCTGAAATTCATGAACTTGTTCGCATGTGTCCCAAAAAAAGGCAGACCATGCTGTTTTCAGCAACCATGACTGAGGAGATTAACGAACTCATTAAACTTTCCCTGTCAAAACCCTTGCGTCTTTCTGCTGACCCATCTACAAAACGCCCAGCAACTTTGACTGAAGAGGTGGTTAGAATACGAAGAATGCGGGAAGTAAATCTGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCTAAAGTGATCATCTTCAGTGGAACGAAGCAAGCTGCACATAGATTGAAGATTATATTTGGATTAGCTGGATTAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAACGCCTTGAAGCTTTGGAACAGTTCAGGAAACAGCAGGTGGATTTTTTGGTGGCAACTGATGTGGCTGCTCGTGGTCTTGACATTGTGGGTGTTCAAACCGTTATCAACTTTGCATGTCCACGCGATCTCACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGAAGAGAAGGATACGCTGTCACATTTGTTACCGATAATGACCGGTCACTTTTAAAAGGCATTGCAAAGAGGGCTGGTGCAAAGCTGAAAAGCCGCATTGTTGCAGAGCAATCTATACTAAAGTGGTCTCAAATAATTGATCAAATGGAGGACCAAATTGCTGAAGTACTTCAAGAAGAGAGGGAAGAAATAGCCCTAAGGAAAGCTGAAATGGAGGCCGCAAAGGCCGAAAACATGATTGCACATAGGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAGAAGCTTGTTGCTAAAGCAGCAAAGGACTCCATGGATACGGGAAAGAGTTCCAGGAAGGAGGTAATTAGTGCCCAAGAAGCTGAAGACCTCAAAATGAAGGAAAAGAGGAAGCGAGAGCGAGAGAAAAATTTGCCTAGAAAGAAGCGCCGAAAGTTGGAGGCGGCTAGAGAGATGTTGGAGGACGATGAGGGTTATGATGAAAAGCCAGTCGAAGGTAAGGGGGCAAATAAGAAAGAAAAGGCTGGAATATCACTTGTCGATATTGCTTACCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAGGGCACTAGATTCTGGCAAGATTGTGAAGAAGGTTAAACCGAAATCTAGTCATTCTTCGCGAAAGACTCCTTCAAGGCCAGAAGAGATGCGCGATCTATTCCAGACTGAGATAAAGGATAGAAAACCAAGAAAAGGAGGTAGTGGAGCAGGAAAGAAGCCCAAGAGTTCATTCAAAAGCAAGTCAAGGTATAAGCGCAAGTAG 2271 0.4544 MSPSFVFEPPSDEEIEYSEEEEVEEEEEEDEEEEAESGSEPEEQERKELRASKAKKQTQSPWDFAKYSESVAEEHARRSTTSVDEKITALRLRSTPLIHAPDPEEDNSSEYEPDQQEDYRPEEEEEEEGNAGDNKPYFASSDGTSFHADSFMELNLSRPLLRACEALGYSKPTPIQAACIPLALSGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIEKLAQFTDIKCCLIVGGLSTKVQEVALRSMPDIVVATPGRMIDHLRNSMSVDLDDLSVLILDEADRLLELGFNAEIHELVRMCPKKRQTMLFSATMTEEINELIKLSLSKPLRLSADPSTKRPATLTEEVVRIRRMREVNLEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIVGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKGIAKRAGAKLKSRIVAEQSILKWSQIIDQMEDQIAEVLQEEREEIALRKAEMEAAKAENMIAHREEIFSRPKRTWFVTEKEKKLVAKAAKDSMDTGKSSRKEVISAQEAEDLKMKEKRKREREKNLPRKKRRKLEAAREMLEDDEGYDEKPVEGKGANKKEKAGISLVDIAYRRAKAVKAVKRALDSGKIVKKVKPKSSHSSRKTPSRPEEMRDLFQTEIKDRKPRKGGSGAGKKPKSSFKSKSRYKRK* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1435 756 MobiDBLite consensus disorder prediction 68 84 - -
Lja6g1435 756 MobiDBLite consensus disorder prediction 107 130 - -
Lja6g1435 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 354 IPR014001 -
Lja6g1435 756 MobiDBLite consensus disorder prediction 40 54 - -
Lja6g1435 756 Gene3D - 109 356 IPR027417 -
Lja6g1435 756 Pfam DEAD/DEAH box helicase 173 342 IPR011545 GO:0003676|GO:0005524
Lja6g1435 756 Pfam Helicase conserved C-terminal domain 386 489 IPR001650 -
Lja6g1435 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 380 528 IPR001650 -
Lja6g1435 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 506 IPR027417 -
Lja6g1435 756 MobiDBLite consensus disorder prediction 635 669 - -
Lja6g1435 756 Coils Coil 15 38 - -
Lja6g1435 756 PANTHER BNAA01G17110D PROTEIN 52 735 - -
Lja6g1435 756 MobiDBLite consensus disorder prediction 688 756 - -
Lja6g1435 756 PANTHER RNA HELICASE 52 735 - -
Lja6g1435 756 MobiDBLite consensus disorder prediction 595 628 - -
Lja6g1435 756 SMART helicmild6 404 489 IPR001650 -
Lja6g1435 756 CDD DEADc_DDX27 160 355 - -
Lja6g1435 756 Coils Coil 613 633 - -
Lja6g1435 756 MobiDBLite consensus disorder prediction 595 672 - -
Lja6g1435 756 CDD SF2_C_DEAD 366 498 - -
Lja6g1435 756 MobiDBLite consensus disorder prediction 1 142 - -
Lja6g1435 756 MobiDBLite consensus disorder prediction 12 39 - -
Lja6g1435 756 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 149 177 IPR014014 GO:0003724
Lja6g1435 756 SMART ultradead3 168 369 IPR014001 -
Lja6g1435 756 Gene3D - 367 652 IPR027417 -
Lja6g1435 756 Coils Coil 527 574 - -
Lja6g1435 756 MobiDBLite consensus disorder prediction 710 736 - -
Lja6g1435 756 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 300 308 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1435 Lja-Chr6 40003102 40010145 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1435 116 506 Eukaryotic Initiation Factors Gene Family AT3G13920 32.225 3.19e-52 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1435 K13181 - gmx:100791233 1037.33