Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1421 ATGGTAATGACTGGAGAAACAGTGAACCCGAAAGCTTACCCTCTGGCTGATGCTCAGCTCACGATAACCATCATGGATCTCGTTCAACAAGCTTCCAACTACAAGCAGCTCAAAAAGGGTGCCAATGAAGCTACCAAGACATTGAACAGAGGAATTTCTGAGTTCGTTGTTATGGCCGCGGATGCTGAGCCTCTTGAGATTCTTCTCCATCTTCCTCTACTTGCTGAGGATAAGAATGTTCCCTATGTGTTTGTCCCTTCAAAACAAGCACTTGGGCGAGCATGTGGGGTAACCCGGCCAGTGATTGCATGTTCTGTGACAACAAATGAGGGAAGCCAATTGAAATCTCAAATACAGCAACTCAAGGATGCTATTGAGAAGCTGTTAATCTGA 393 0.4555 MVMTGETVNPKAYPLADAQLTITIMDLVQQASNYKQLKKGANEATKTLNRGISEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTTNEGSQLKSQIQQLKDAIEKLLI* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1421 130 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 6 130 - -
Lja6g1421 130 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 24 113 IPR004038 -
Lja6g1421 130 SUPERFAMILY L30e-like 8 128 IPR029064 -
Lja6g1421 130 PRINTS Ribosomal protein L7A/RS6 family signature 37 51 IPR018492 -
Lja6g1421 130 PRINTS Ribosomal protein L7A/RS6 family signature 56 69 IPR018492 -
Lja6g1421 130 PRINTS Ribosomal protein L7A/RS6 family signature 72 82 IPR018492 -
Lja6g1421 130 PRINTS Ribosomal protein L7A/RS6 family signature 82 96 IPR018492 -
Lja6g1421 130 ProSitePatterns Ribosomal protein L7Ae signature. 75 92 IPR004037 GO:0042254|GO:1990904
Lja6g1421 130 Coils Coil 111 130 - -
Lja6g1421 130 PANTHER NHP2-LIKE PROTEIN 1 6 130 - -
Lja6g1421 130 Gene3D - 2 130 IPR029064 -
Lja6g1421 130 PRINTS High mobility group-like nuclear protein signature 10 23 IPR002415 GO:0003723|GO:0005730
Lja6g1421 130 PRINTS High mobility group-like nuclear protein signature 23 38 IPR002415 GO:0003723|GO:0005730
Lja6g1421 130 PRINTS High mobility group-like nuclear protein signature 40 50 IPR002415 GO:0003723|GO:0005730
Lja6g1421 130 PRINTS High mobility group-like nuclear protein signature 84 96 IPR002415 GO:0003723|GO:0005730
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1421 Lja-Chr6 39838784 39840485 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1421 37 126 Cytoplasmic Ribosomal Protein Gene Family AT2G47610 28.889 5.55e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1421 K12845 - jre:109006247 234.572