Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1408 ATGAAATTTTCATCTACTGCAAAGAGTGGTGTTGGTGTGGCTTCAATGGGAGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTAGAGTTTTGGGTATTTATGGACTTATTATTGCTGTTATTATCAGTACTGGAATTAACCCTAAGGTCAAATCTTACTACCTCTTTGATGGTTATGCGCATCTCTCCTCTGGTCTTGCCTGCGGGCTTGCTGGGCTCTCTGCCGGCATGGTGATGCTGGTGTCAGGTATGATGCTTCTGCCTCAGTGTGTTAATGTTAGAGTATATATGATTTGGCTTCTTTTCTTAATATTCTCTCAGTTCTCATTGCTTTGTGATAGTATTTGTTTTTCTAAGATTTTATTTTAA 387 0.4031 MKFSSTAKSGVGVASMGVMRPELVMKSIVPVVMARVLGIYGLIIAVIISTGINPKVKSYYLFDGYAHLSSGLACGLAGLSAGMVMLVSGMMLLPQCVNVRVYMIWLLFLIFSQFSLLCDSICFSKILF* 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1408 128 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 5 113 - -
Lja6g1408 128 PRINTS Vacuolar ATP synthase 16kDa subunit signature 2 26 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lja6g1408 128 PRINTS Vacuolar ATP synthase 16kDa subunit signature 28 52 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lja6g1408 128 Pfam ATP synthase subunit C 6 48 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lja6g1408 128 Gene3D - 3 120 IPR035921 -
Lja6g1408 128 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 5 89 IPR011555 GO:0033179|GO:0046961|GO:1902600
Lja6g1408 128 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 5 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1408 Lja-Chr6 39616769 39617578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1408 6 113 Primary Pumps ATPases(2) AT4G38920 74.312 3.36e-49 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1408 K02155 - rcu:8275823 132.494