Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1398 ATGTTCAGGGGGGAAAAATTGGAAGCTGCTGTATCCAAAACTGAACCAATTGCTGTTAGTATTGTTGAGGGTGGTGTTTATCAGATATCAAACTTCCGGATTATTCCATATAGTGATCCACAAAGATACACAAGGAATAGGTATAAGATTATTTTCCATAGTGGTACCAGAATTGTCCCATTTGAAGATGATCGAATTCCTTTGCATGGCTGGTCATTCTTTGGCATTGAGAATATTCTTAGAGTTGGTGATAATTTCGGTTACTTAGTGGATGTTATTGGAGTTCTAGCTGCTGTGTCAAAGGGGAAACTTGTGATTAAGGACAAAAGAGTTTACAAGAGGATGGTTATTAATATTATTGATTTAACTGGTATGTGTCAATGTGTGGTGAATGGTGATGCTGTAGACATTCTTTGTAATTATCTGTGTTTGGATTGGGTAAATAGGCCTACTATTGGATTGCGGTATGTTGAGGTAAAGAAAGTTGAAGGAAAAATTTTCCTGAATTCTATTCCTCATGTGTCAAAGATTTACCTCAATCATACTTATCATGAAGATTGGGTAATTGGTGATAGATTCTGTGGTCTTAAATGTGATGTTCCTGTTGAATGTGTTGGAAGTTTTGATCCCGATGTTGATATTAAAGATGACATGCTCAATTGTCATGCAAAGACATCTATTTCTGAATTGCTTAAGATTAAAGAGCGAGGTGTTGCTGTTGTTAAAGCTTCTATTAATGCATTTATTAATGATTGTCCATGGTCGTATAACTCCTGCTGGTGTCACATGGAATTGCAAAATGAGAAGGATGTTTATAGATGTAATCGATGCTATCGAGATATTGCTCATGCAGTTCGCAGGTATCGCATTAAGTTGGAGGTCTTTGATGGCTATGACAACACCTTATTTATGCTTAACGATTCTCAAGTAAAACATATTGTGGGCATCCAATGTGAGGAATTATTTGCTTTGAATCAGGATGAAGAGAAGAGCAGATATCCTATTCAACTTGTGGAGAGTTTGTTGTGCAAAGAGTTGCTTTTTAAGGTTCGAACTGGGGGTGGGTTAACGTATTATGGTGAAGAGGTTTTTGAAGTCCTGAGGATTTGTGATGATGTTGGTGTGATAGCTATGTTTAACCCAATTGATTCCTTTTCCACACCCCTGAAGGATAAGTTCATTCCGTCGTTCACGAAGTTTGGAGACTCTGCTGATGGTATAAATAGTGAAGGCTTTCAGGCTGGTGTGTTGTATGGGAGAAAATCTGATGATTTTAGTAACATTGCTGAAATTTATTCTTCAAGTTCTGGTAATGCATCCATTAACCAAGTCATTGCTCATCGGCCTATCAAAAGGAAACTAATTCATGAATTTGAAGATGAGGCTCATGATCGTGATCAGGAATTTGAATATGTTGACGAGTGTGTTCGGAGGAAATTGTTTGAGAACTATGAATATAGTACAGGAGGAGAATGCAGTGGGATTAAATTGAATGATTCTGTAGTGAAAACTGTGGAAAATTCAACAGATGAATTTATGGGTAATGGTTCGAAAAAGTATAATGTCAATGTAAATGAGGAGGAAACATGGATGCTGGTGAAGCCTGATGTTCATACTGATGGGCACCTTCTTAAAAAAGTTTCCAGTGTTGATGGAGATCATAAAATGATGGCCTATGTGGGCAATGGTCCAACCTATGGTGAGACAATCAAGCATAATGAGATTATTGATTTGACCCTGTTGTCTGATGAAGATGAAGAGGTATCTCAAAAGGATTGTTGTCTGAAGAAATCTGTTGATATTTCAGTGTCTTCCATGAGTGATAACTTTGTTATTTTAGCTGAAGATACTGACGAAGATGTGGACTGCGTTGAAGTTATCTATCTGTCTGAGTAA 1896 0.3724 MFRGEKLEAAVSKTEPIAVSIVEGGVYQISNFRIIPYSDPQRYTRNRYKIIFHSGTRIVPFEDDRIPLHGWSFFGIENILRVGDNFGYLVDVIGVLAAVSKGKLVIKDKRVYKRMVINIIDLTGMCQCVVNGDAVDILCNYLCLDWVNRPTIGLRYVEVKKVEGKIFLNSIPHVSKIYLNHTYHEDWVIGDRFCGLKCDVPVECVGSFDPDVDIKDDMLNCHAKTSISELLKIKERGVAVVKASINAFINDCPWSYNSCWCHMELQNEKDVYRCNRCYRDIAHAVRRYRIKLEVFDGYDNTLFMLNDSQVKHIVGIQCEELFALNQDEEKSRYPIQLVESLLCKELLFKVRTGGGLTYYGEEVFEVLRICDDVGVIAMFNPIDSFSTPLKDKFIPSFTKFGDSADGINSEGFQAGVLYGRKSDDFSNIAEIYSSSSGNASINQVIAHRPIKRKLIHEFEDEAHDRDQEFEYVDECVRRKLFENYEYSTGGECSGIKLNDSVVKTVENSTDEFMGNGSKKYNVNVNEEETWMLVKPDVHTDGHLLKKVSSVDGDHKMMAYVGNGPTYGETIKHNEIIDLTLLSDEDEEVSQKDCCLKKSVDISVSSMSDNFVILAEDTDEDVDCVEVIYLSE* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1398 631 Gene3D - 217 361 IPR012340 -
Lja6g1398 631 PANTHER REPLICATION FACTOR A 1, RFA1 241 395 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lja6g1398 631 Gene3D - 10 64 IPR012340 -
Lja6g1398 631 Pfam Replication factor-A C terminal domain 241 352 IPR013955 -
Lja6g1398 631 SUPERFAMILY Nucleic acid-binding proteins 237 353 IPR012340 -
Lja6g1398 631 PANTHER BNAC01G35430D PROTEIN 241 395 - -
Lja6g1398 631 Gene3D - 65 192 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1398 Lja-Chr6 39371287 39375807 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1398 21 330 Core DNA Replication Machinery Family AT4G19130 23.009 1.08e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1398 - - lja:Lj4g3v0472980.3 725.702