Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1396 ATGGGTGGATGTTTAGGTAAAGGTAAGGATTCAGAGGTAGAGCACAATGGTTACAGACATGCTGGGGCTGGTGGTGGTGTGCACAACCAGAAGACCCATGAACCTTTGGTCAACCAGTCAAGAGCAGCACCTTCTTATCAACCTTACCAGTTACCTGAAAAACATGCTTCATCCACTCAGGCTGTGCCTCAGGTACCAAGGAAGCCTTCTGTTGCTTCTTCCCCAAGCCCAAAACCTGTTAAGCAACAGGATTCAATCCTTGGGAAACCATTTGAGGATGTGAAGCAGTTGTACACTCTTGGGAAAGAATTGGGGAGAGGGCAATTTGGGGTTACATATCTATGCACTGAGATTTCAACTAAGCTGCTGTATGCTTGCAAATCTATCTCAAAGAGGAAACTTGTTAGCAAATCTGATAAGGAGGATATAAAGAGGGAGATTCAGATCATGCAGCATTTGATTGGTCAACCTAACATTGTTGAGTTCAAAGGTGCTTATGAGGATAAGCAATCGGTTCATGTTGTGATGGAGCTATGTGCAGGTGGTGAGCTTTTTGATAGGATCATTGCCAAGGGGCATTACAGTGAAAGGGCCGCTGCTTCAATATGCAGACAAATTGTTAATGTTGTTCATGTCTGCCATTTCATGGGTGTGATGCATAGGGATCTGAAGCCAGAGAATTTCTTATTATCTAGCAAGGATGAAAAAGCACTTCTCAAGGCCACGGATTTTGGCTTGTCTGTTTTCATTGATGAGGGCAAGGTGTATCGAGATATAGTTGGGAGTGCTTATTATGTTGCTCCAGAAGTTCTAAAGCGCAGATATGGGAAGGAAATAGATATATGGAGTGCAGGAGTTATATTGTATATCTTACTTAGTGGCGTCCCTCCATTTTGGGCTGAGACTGAAAAGGGAATATTTGATGCCATATTGGAAGGTCATATTGATTTTGAAAGTCAACCATGGCCTAAAATATCTGATAGTGCCAAGGATCTTGTTCGTAAGATGCTTATACAGGATCCAAAGAAACGCATTACTTCTGCTCAGGTTTTAGAGCACCCATGGATTAAAGATGGAAAAGCTTCTGACAAGCCAATGGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCTATGAATAAACTTAAGAAACTTGCCCTGAAGGTCATTGCTGAGAATATGTCTGAAGAAGAGATTAAGGGTTTGAAGGCAATGTTTTCAAATATAGACACTGACAGGAGTGGTACAATCACATATGAGGAGCTAAAGGCAGGGTTGCAAAGACTTGGCTCGAAGCTTACTGAAGTTGAAATGAAGCAACTTATGGAAGCTGCTGATGTAGATGGAAATGGCACAATTGACTACATAGAATTTGTCACTGCTACAATGCATAGACACAAGTTAGAAAGAGATGACCATCTTAACAAAGCCTTCCAATACTTTGATAAGGACAGCAGTGGCTTTATTACAAGAGATGAACTGGAAATAGCCATGAAAGAATATGGTATGGGTGATGATGCCACAATCAAGGAAATTATATCTGAAGTTGATACAATTATATCTGAAGTGGATACAGATCATGATGGTAGAATCAACTATGAAGAGTTCTGTGCAATGATGAGAAGTGGAAACCAACAACAAGGGAAGGTGTTCTAA 1659 0.4123 MGGCLGKGKDSEVEHNGYRHAGAGGGVHNQKTHEPLVNQSRAAPSYQPYQLPEKHASSTQAVPQVPRKPSVASSPSPKPVKQQDSILGKPFEDVKQLYTLGKELGRGQFGVTYLCTEISTKLLYACKSISKRKLVSKSDKEDIKREIQIMQHLIGQPNIVEFKGAYEDKQSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHVCHFMGVMHRDLKPENFLLSSKDEKALLKATDFGLSVFIDEGKVYRDIVGSAYYVAPEVLKRRYGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFESQPWPKISDSAKDLVRKMLIQDPKKRITSAQVLEHPWIKDGKASDKPMDSAVLSRMKQFRAMNKLKKLALKVIAENMSEEEIKGLKAMFSNIDTDRSGTITYEELKAGLQRLGSKLTEVEMKQLMEAADVDGNGTIDYIEFVTATMHRHKLERDDHLNKAFQYFDKDSSGFITRDELEIAMKEYGMGDDATIKEIISEVDTIISEVDTDHDGRINYEEFCAMMRSGNQQQGKVF* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1396 552 ProSiteProfiles EF-hand calcium-binding domain profile. 512 547 IPR002048 GO:0005509
Lja6g1396 552 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Lja6g1396 552 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 42 546 - -
Lja6g1396 552 Gene3D - 364 548 - -
Lja6g1396 552 CDD EFh 403 462 IPR002048 GO:0005509
Lja6g1396 552 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
Lja6g1396 552 SUPERFAMILY Protein kinase-like (PK-like) 98 374 IPR011009 -
Lja6g1396 552 ProSitePatterns EF-hand calcium-binding domain. 525 537 IPR018247 -
Lja6g1396 552 Pfam EF-hand domain pair 473 542 IPR002048 GO:0005509
Lja6g1396 552 Pfam EF-hand domain pair 403 463 IPR002048 GO:0005509
Lja6g1396 552 SUPERFAMILY EF-hand 379 542 IPR011992 -
Lja6g1396 552 CDD EFh 474 542 IPR002048 GO:0005509
Lja6g1396 552 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Lja6g1396 552 Gene3D Transferase(Phosphotransferase) domain 1 184 363 - -
Lja6g1396 552 Pfam Protein kinase domain 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1396 552 CDD STKc_CAMK 98 355 - -
Lja6g1396 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Lja6g1396 552 PANTHER SERINE/THREONINE-PROTEIN KINASE 42 546 - -
Lja6g1396 552 Gene3D Phosphorylase Kinase; domain 1 100 183 - -
Lja6g1396 552 Coils Coil 420 440 - -
Lja6g1396 552 MobiDBLite consensus disorder prediction 1 86 - -
Lja6g1396 552 ProSitePatterns Protein kinases ATP-binding region signature. 104 127 IPR017441 GO:0005524
Lja6g1396 552 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Lja6g1396 552 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Lja6g1396 552 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Lja6g1396 552 SMART efh_1 438 466 IPR002048 GO:0005509
Lja6g1396 552 SMART efh_1 402 430 IPR002048 GO:0005509
Lja6g1396 552 SMART efh_1 516 544 IPR002048 GO:0005509
Lja6g1396 552 SMART efh_1 474 502 IPR002048 GO:0005509
Lja6g1396 552 SMART serkin_6 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja6g1396 552 MobiDBLite consensus disorder prediction 32 81 - -
Lja6g1396 552 ProSiteProfiles Protein kinase domain profile. 98 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1396 Lja-Chr6 39322315 39329799 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1396 1 552 EF-hand Containing Proteins AT3G20410 71.529 0.0 816
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lja6g1396 Pkinase 1.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1396 K13412 - gmx:100798651 948.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1396 6 39322315 39329799 Lja6g1396 6 39322315 39329799 ECH
Lja6g1396 6 39322315 39329799 Lja6g1396 6 39322315 39329799 PCT