Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1395 ATGTTGGTGATCATCATAAATCTTAAATTTGGTCATGAAGATGGTTTTTTTCATTCTATATATATATATATATATATATATATATATATATTCCTCGTATGTTGTTTCTTTTTTGTGGGTAATCAGCCTTCGGTCACTACAAGTTTTCAACAAGCAAAGTACATGGTTGAGTTGGAAATCCAGGTCCCAACCCCTTTTGATCCATTTGCTGAGGCTAAAGAAGCGGATGCCCCCGGAGCCAAGGAGTATGTGCATATACGCATTCAGCAAAGGAATGGAAAGAAAAGCTTGACCACAGTGCAAGGGCTGAAGAAGGAGTTCAGCTACGAGAAGATCCTCAAGGATCTTAAGAAGGAGTTTTGCTGCAACGGGAATGTTGTGCAGGATAAGGAGCTGGGGAAGATAATTCAGCTCCAAGGTGATCAGCGCAAGAAGGTGTCTCAGTTTCTGGTTCAGGCTGGCCTTGTCAGGAAAGAACAGATTAAGATTCATGGTTTTTGA 501 0.4072 MLVIIINLKFGHEDGFFHSIYIYIYIYIYIFLVCCFFFVGNQPSVTTSFQQAKYMVELEIQVPTPFDPFAEAKEADAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQAGLVRKEQIKIHGF* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1395 166 ProSiteProfiles Translation initiation factor SUI1 family profile. 84 154 IPR001950 GO:0003743|GO:0006413
Lja6g1395 166 Pfam Translation initiation factor SUI1 81 154 IPR001950 GO:0003743|GO:0006413
Lja6g1395 166 Gene3D - 45 166 - -
Lja6g1395 166 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 59 166 IPR005874 GO:0003743
Lja6g1395 166 CDD eIF1_SUI1 82 165 IPR005874 GO:0003743
Lja6g1395 166 PANTHER PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG 55 166 - -
Lja6g1395 166 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 55 166 - -
Lja6g1395 166 SUPERFAMILY eIF1-like 54 166 IPR036877 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1395 Lja-Chr6 39320260 39320966 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g1395 55 166 Eukaryotic Initiation Factors Gene Family AT5G54940 84.821 1.50e-69 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1395 K03113 - gmx:100787664 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1395 6 39320260 39320966 Lja6g1395 6 39320260 39320966 ECH
Lja6g1395 6 39320260 39320966 Lja6g1395 6 39320260 39320966 PCT